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Hi-D: nanoscale mapping of nuclear dynamics in single living cells.

ABSTRACT: Bulk chromatin motion has not been analyzed at high resolution. We present Hi-D, a method to quantitatively map dynamics of chromatin and abundant nuclear proteins for every pixel simultaneously over the entire nucleus from fluorescence image series. Hi-D combines reconstruction of chromatin motion and classification of local diffusion processes by Bayesian inference. We show that DNA dynamics in the nuclear interior are spatially partitioned into 0.3-3-?m domains in a mosaic-like pattern, uncoupled from chromatin compaction. This pattern was remodeled in response to transcriptional activity. Hi-D can be applied to any dense and bulk structures opening new perspectives towards understanding motion of nuclear molecules.

SUBMITTER: Shaban HA

PROVIDER: S-EPMC7168861 | biostudies-literature | 2020 Apr

REPOSITORIES: biostudies-literature

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Hi-D: nanoscale mapping of nuclear dynamics in single living cells.

Shaban Haitham A HA Barth Roman R Recoules Ludmila L Bystricky Kerstin K

Genome biology 20200420 1

Bulk chromatin motion has not been analyzed at high resolution. We present Hi-D, a method to quantitatively map dynamics of chromatin and abundant nuclear proteins for every pixel simultaneously over the entire nucleus from fluorescence image series. Hi-D combines reconstruction of chromatin motion and classification of local diffusion processes by Bayesian inference. We show that DNA dynamics in the nuclear interior are spatially partitioned into 0.3-3-μm domains in a mosaic-like pattern, uncou ...[more]

PMID: 32312289

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