Dataset Information

A Distributed Stream Processing Middleware Framework for Real-Time Analysis of Heterogeneous Data on Big Data Platform: Case of Environmental Monitoring.

ABSTRACT: In recent years, the application and wide adoption of Internet of Things (IoT)-based technologies have increased the proliferation of monitoring systems, which has consequently exponentially increased the amounts of heterogeneous data generated. Processing and analysing the massive amount of data produced is cumbersome and gradually moving from classical 'batch' processing-extract, transform, load (ETL) technique to real-time processing. For instance, in environmental monitoring and management domain, time-series data and historical dataset are crucial for prediction models. However, the environmental monitoring domain still utilises legacy systems, which complicates the real-time analysis of the essential data, integration with big data platforms and reliance on batch processing. Herein, as a solution, a distributed stream processing middleware framework for real-time analysis of heterogeneous environmental monitoring and management data is presented and tested on a cluster using open source technologies in a big data environment. The system ingests datasets from legacy systems and sensor data from heterogeneous automated weather systems irrespective of the data types to Apache Kafka topics using Kafka Connect APIs for processing by the Kafka streaming processing engine. The stream processing engine executes the predictive numerical models and algorithms represented in event processing (EP) languages for real-time analysis of the data streams. To prove the feasibility of the proposed framework, we implemented the system using a case study scenario of drought prediction and forecasting based on the Effective Drought Index (EDI) model. Firstly, we transform the predictive model into a form that could be executed by the streaming engine for real-time computing. Secondly, the model is applied to the ingested data streams and datasets to predict drought through persistent querying of the infinite streams to detect anomalies. As a conclusion of this study, a performance evaluation of the distributed stream processing middleware infrastructure is calculated to determine the real-time effectiveness of the framework.

SUBMITTER: Akanbi A

PROVIDER: S-EPMC7308861 | biostudies-literature | 2020 Jun

REPOSITORIES: biostudies-literature

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A Distributed Stream Processing Middleware Framework for Real-Time Analysis of Heterogeneous Data on Big Data Platform: Case of Environmental Monitoring.

Akanbi Adeyinka A Masinde Muthoni M

Sensors (Basel, Switzerland) 20200603 11

In recent years, the application and wide adoption of Internet of Things (IoT)-based technologies have increased the proliferation of monitoring systems, which has consequently exponentially increased the amounts of heterogeneous data generated. Processing and analysing the massive amount of data produced is cumbersome and gradually moving from classical 'batch' processing-extract, transform, load (ETL) technique to real-time processing. For instance, in environmental monitoring and management d ...[more]

PMID: 32503145

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Project description:BackgroundThe emergence of high throughput technologies that produce vast amounts of genomic data, such as next-generation sequencing (NGS) is transforming biological research. The dramatic increase in the volume of data, the variety and continuous change of data processing tools, algorithms and databases make analysis the main bottleneck for scientific discovery. The processing of high throughput datasets typically involves many different computational programs, each of which performs a specific step in a pipeline. Given the wide range of applications and organizational infrastructures, there is a great need for highly parallel, flexible, portable, and reproducible data processing frameworks. Several platforms currently exist for the design and execution of complex pipelines. Unfortunately, current platforms lack the necessary combination of parallelism, portability, flexibility and/or reproducibility that are required by the current research environment. To address these shortcomings, workflow frameworks that provide a platform to develop and share portable pipelines have recently arisen. We complement these new platforms by providing a graphical user interface to create, maintain, and execute complex pipelines. Such a platform will simplify robust and reproducible workflow creation for non-technical users as well as provide a robust platform to maintain pipelines for large organizations.ResultsTo simplify development, maintenance, and execution of complex pipelines we created DolphinNext. DolphinNext facilitates building and deployment of complex pipelines using a modular approach implemented in a graphical interface that relies on the powerful Nextflow workflow framework by providing 1. A drag and drop user interface that visualizes pipelines and allows users to create pipelines without familiarity in underlying programming languages. 2. Modules to execute and monitor pipelines in distributed computing environments such as high-performance clusters and/or cloud 3. Reproducible pipelines with version tracking and stand-alone versions that can be run independently. 4. Modular process design with process revisioning support to increase reusability and pipeline development efficiency. 5. Pipeline sharing with GitHub and automated testing 6. Extensive reports with R-markdown and shiny support for interactive data visualization and analysis.ConclusionDolphinNext is a flexible, intuitive, web-based data processing and analysis platform that enables creating, deploying, sharing, and executing complex Nextflow pipelines with extensive revisioning and interactive reporting to enhance reproducible results.

Dataset Information

A Distributed Stream Processing Middleware Framework for Real-Time Analysis of Heterogeneous Data on Big Data Platform: Case of Environmental Monitoring.

Publications

A Distributed Stream Processing Middleware Framework for Real-Time Analysis of Heterogeneous Data on Big Data Platform: Case of Environmental Monitoring.

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