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The first complete chloroplast genome of Quercus coccinea (Scarlet Oak) and its phylogenetic position within Fagaceae.

ABSTRACT: Quercus coccinea is a native to North America, which grows well in acidic soil and resists cold to extreme low temperature -40?°C. The chloroplast (cp) genome of Q. coccinea, sequenced based on next-generation platform (NEOSAT), is 161,298?bp in size. The cp genome encodes 133 genes, including 88 protein-coding genes (PCGs), 8 rRNA genes, and 37 tRNA genes. Phylogenetic relationship analysis based on complete cp genome sequences exhibited that both of Q. coccinea and Q. rubra were phylogenetically closer to Q. aliena var. Acutiserrata.

SUBMITTER: Yang X

PROVIDER: S-EPMC7707449 | biostudies-literature | 2019 Oct

REPOSITORIES: biostudies-literature

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The first complete chloroplast genome of Quercus coccinea (Scarlet Oak) and its phylogenetic position within Fagaceae.

Yang Xuemei X Yin Yanlei Y Feng Lijuan L Tang Haixia H Wang Fei F

Mitochondrial DNA. Part B, Resources 20191018 2

Quercus coccinea is a native to North America, which grows well in acidic soil and resists cold to extreme low temperature -40 °C. The chloroplast (cp) genome of Q. coccinea, sequenced based on next-generation platform (NEOSAT), is 161,298 bp in size. The cp genome encodes 133 genes, including 88 protein-coding genes (PCGs), 8 rRNA genes, and 37 tRNA genes. Phylogenetic relationship analysis based on complete cp genome sequences exhibited that both of Q. coccinea and Q. r ...[more]

PMID: 33366118

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