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Characterization of the complete chloroplast genome of Quercus virginiana Mill. (Fagaceae).

ABSTRACT: The complete chloroplast genome of Quercus virginiana was sequenced with Illumina HiSeq 2000 platform. It was a typical quadruple structure as other plants of Quercus with 161,221 bp in length, including a large single-copy (LSC: 90,553 bp) region and a small single-copy (SSC: 19,016 bp) which were separated by a pair of inverted repeats (IRa, b: 25,826 bp) region. The overall GC content is 36.9%. A total of 131 genes was annotated which contained 86 protein-coding genes including the Trans splicing gene of rps12, 37 tRNA genes, and 8 rRNA genes. ML phylogenetic analysis compared with 17 expressed chloroplast genomes revealed that Q. virginiana was a sister to other species of Quercus, which were grouped together with five species of Section Quercus and another 12 species of Quercus were divided into another group.

SUBMITTER: Liu D

PROVIDER: S-EPMC7971197 | biostudies-literature | 2021 Mar

REPOSITORIES: biostudies-literature

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Characterization of the complete chloroplast genome of Quercus virginiana Mill. (Fagaceae).

Liu Dan D Li Wen-Qing WQ Xie Xiao-Man XM Liu De-Shen DS Li Feng F Gao Guangchen G Zhuang Zhen-Jie ZJ Lu Yi-Zeng YZ Li Wei W

Mitochondrial DNA. Part B, Resources 20210315 3

The complete chloroplast genome of Quercus virginiana was sequenced with Illumina HiSeq 2000 platform. It was a typical quadruple structure as other plants of Quercus with 161,221 bp in length, including a large single-copy (LSC: 90,553 bp) region and a small single-copy (SSC: 19,016 bp) which were separated by a pair of inverted repeats (IRa, b: 25,826 bp) region. The overall GC content is 36.9%. A total of 131 genes was annotated which contained 86 protein-coding genes including ...[more]

PMID: 33796661

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