Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Phlaeoba infumata (Orthoptera: Acrididae).

ABSTRACT: Phlaeoba infumata belongs to Acrididae, Orthoptera. The complete mitochondrial genome of P. infumata is 15,642?bp in length, and its arrangement was identical to the Locusta migratoria mitogenome, and contained 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes and a A?+?T-rich region. Using the 13 PCGs and two rRNA of P. infumata, together with 10 other close-related and two outgroup species, we constructed Bayesian inference (BI) phylogenetic tree to validate the mitogenome sequences of P. infumata.

SUBMITTER: Liu F

PROVIDER: S-EPMC7800512 | biostudies-literature | 2016 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome of Phlaeoba infumata (Orthoptera: Acrididae).

Liu Fei F Qiu Zhongying Z

Mitochondrial DNA. Part B, Resources 20160412 1

Phlaeoba infumata belongs to Acrididae, Orthoptera. The complete mitochondrial genome of P. infumata is 15,642 bp in length, and its arrangement was identical to the Locusta migratoria mitogenome, and contained 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes and a A + T-rich region. Using the 13 PCGs and two rRNA of P. infumata, together with 10 other close-related and two outgroup species, we constructed Bayesian inference (BI) phylogenetic tree to vali ...[more]

PMID: 33473471

Similar Datasets

Complete Mitochondrial Genome Sequence of Acrida cinerea (Acrididae: Orthoptera) and Comparative Analysis of Mitochondrial Genomes in Orthoptera.

Project description:The complete 15,599-bp mitogenome of Acrida cinerea was determined and compared with that of the other 20 orthopterans. It displays characteristic gene content, genome organization, nucleotide composition, and codon usage found in other Caelifera mitogenomes. Comparison of 21 orthopteran sequences revealed that the tRNAs encoded by the H-strand appear more conserved than those by the L-stand. All tRNAs form the typical clover-leaf structure except trnS (agn), and most of the size variation among tRNAs stemmed from the length variation in the arm and loop of TΨC and the loop of DHU. The derived secondary structure models of the rrnS and rrnL from 21 orthoptera species closely resemble those from other insects on CRW except a considerably enlarged loop of helix 1399 of rrnS in Caelifera, which is a potentially autapomorphy of Caelifera. In the A+T-rich region, tandem repeats are not only conserved in the closely related mitogenome but also share some conserved motifs in the same subfamily. A stem-loop structure, 16 bp or longer, is likely to be involved in replication initiation in Caelifera and Grylloidea. A long T-stretch (>17 bp) with conserved stem-loop structure next to rrnS on the H-strand, bounded by a purine at either end, exists in the three species from Tettigoniidae.

| S-EPMC3004375 | biostudies-literature

The complete mitochondrial genome of the Hieroglyphus tonkinensis (Orthoptera: Acrididae).

Project description:Hieroglyphus tonkinensis (Orthoptera: Caelifera: Acrididae) is an important agricultural pest to bamboo, rice and other gramineous crops. The complete mitochondrial genome of H. tonkinensis is 15,625 bp in length and consists of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and 1 A + T-rich region. The gene order of the mitogenome is identical with most orthopteran insects. Most protein-coding genes start with typical ATN codon except for COX1, which initiates with ACC codon instead. While all PCGs use complete stop codons (TAA and TAG). In addition, 13 related species and 2 outgroup taxa were used to construct the phylogenetic tree to further validate the mitogenome of H. tonkinensis. The result showed that H. tonkinensis is sister group to a clade of Oxya and Pseudoxya.

| S-EPMC7800144 | biostudies-literature

The complete mitochondrial genome of Sinopodisma hengshanica (Orthoptera: Acrididae) and its phylogenetic implication.

Project description:The complete mitochondrial genome (mitogenome) of Sinopodisma hengshanica (Orthoptera: Acrididae) was firstly determined and analyzed in the present study. Assembled mitogenome sequence of S. hengshanica is 15,623 bp in size, containing 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), as well as one A + T-rich region. Its gene component and arrangement are identical with other Acrididae species. The overall nucleotide composition is as follows: A (42.89%), G (10.34%), T (33.07%), and C (13.70%). All PCGs are initiated by typical ATN codons, and terminated with harboring complete stop codons TAA and TAG. Furthermore, phylogenetic trees were reconstructed based on 13 PCGs to validate the taxonomic status of S. hengshanica, exhibiting a close relationship with Sinopodisma rostellocerca.

| S-EPMC8986288 | biostudies-literature

The complete mitochondrial genome of Calliptamus barbarus Costa 1836 (Orthoptera: Acrididae) from Qinghai Lake, China and its phylogeny.

Project description:The complete mitochondrial genome of Calliptamus barbarus (Orthoptera: Acrididae: Calliptaminae) from Qinghai Lake, Qinghai province, China is a circular molecule of 15,668 bp in size, and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and one AT-rich region. The overall nucleotide composition is 41.8% of A, 30.9% of T, 11.3% of G, and 16.0% of C. All PCGs started with typical ATN codon, e.g. one with ATA, two with ATT and ATC, and eight with ATG. Eleven PCGs ended with complete stop codon TAA, and the other two genes (ND1 and ND4L) ended with TAG. Phylogenetic trees were reconstructed with 13 PCGs using Bayesian Inference (BI) and maximum likelihood (ML) to validate the taxonomic status of C. barbarus, exhibiting the close relationships with C. abbreviates + C. italicus.

| S-EPMC7954494 | biostudies-literature

The complete mitochondrial genome of Fruhstorferiola huayinensis (Orthoptera: Catantopidae).

Project description:The complete mitochondrial genome of Fruhstorferiola huayinensis is 16 227 bp in length, and consisted of 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes and a control region. In control region, a tRNAIle-like sequence was identified. Additionally, a 259 bp long tandem repeat was identified in the control region. Using the 13 PCGs and 2 rRNA of F. huayinensis, together with 14 other close-related and 2 outgroup species, we constructed BI phylogenetic tree to verify the accuracy and utility of new determined mitogenome sequences.

| S-EPMC7871826 | biostudies-literature

The complete mitochondrial genome of Fruhstorferiola tonkinensis (Orthoptera: Catantopidae).

Project description:Fruhstorferiola tonkinensis belongs to the group of Catantopidae, which is the largest group in Acridoidae. The complete mitochondrial genome (mitogenome) of Fruhstorferiola tonkinensis is 15,637 bp in length, including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA genes and 1 A + T-rich region. The gene order and arrangement are identical to other Acridoidae species. Most PCGs (except for the ATP6) start with the typical ATN codons, while most stop codons are TAA, TAG. The combined dataset of 13 PCGs and 2 rRNAs from 17 grasshoppers (including 15 Catantopidae species and 2 outgroups) is used to construct phylogenetic tree and analyse phylogenetic relationship of Catantopidae.

| S-EPMC7800193 | biostudies-literature

The complete mitochondrial genome of Calliptamus abbreviatus Ikovnnikov (Orthoptera: acridoidea).

Project description:Calliptamus abbreviatus Ikovnnikov (Orthoptera: Acridoidea) is one of the important pests in the grasslands in northern China. The complete mitochondrial genome of this insect was sequenced. This genome is 16,615?bp long, with an AT content of 73.3%, containing 37 typical animal mitochondrial genes and an AT-rich region. All 13 PCGs share the start codon ATN, and the usual termination codons (TAA) are found from 13 protein-coding genes. All of the 22 typical animal tRNA genes were found in C. abbreviatus mt-genome, and most of the tRNAs could be folded into the classic cloverleaf secondary structure except for tRNA-Ser (AGN), which lacks the dihydrouracil (DHU) stem. The sizes of the large and small ribosomal RNA genes are 1555 and 799?bp long, respectively. The AT content of the AT-rich region is 87.0%. Phylogenetic analysis supports that the coleopteran insects from the same family cluster in the same group.

| S-EPMC7800107 | biostudies-literature

The complete mitochondrial genome of Eclipophleps carinata (Orthoptera: Acridoidea: Gomphoceridae).

Project description:The complete Eclipophleps carinata mitogenome was sequenced through Illumina HiSeq 2500 platform and the resulting data were analyzed in this paper. The mitochondrial genome of E. carinata is a typical circular DNA molecule of 15,781 bp with 37 genes and 74.5% A + T content, which encoded 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and the control region. The E. carinata mitochondrial genome and 27 mitochondrial genomes (downloaded from NCBI) were employed to construct phylogenetic tree, in which Ruspolia dubia and Teleogryllus occipitails were the outgroups. Phylogenetic reconstruction validated the taxonomic status of E. carinata, which was placed in the monophyletic Gomphocerinae in Acrididae.

| S-EPMC8018437 | biostudies-literature

The complete mitochondrial genome of Ruspolia yunnana (Orthoptera: Tettigoniidae: Conocephalinae).

Project description:The complete mitochondrial genome of Ruspolia yunnana was 15,794 bp and consisted of 37 genes and a control region. The A + T content of the mitogenome was as high as 71.3%. Most protein-coding genes started with the codon ATN and ended with stop codons TAA. Phylogenetic analyses based on mitogenomes suggested that Ruspolia yunnana and Ruspolia dubia have the closest genetic relationship. In general, this study provided meaningful genetic information for Ruspolia yunnana and validated the phylogenetic relationships within the Conocephalinae.

| S-EPMC9487913 | biostudies-literature

The complete mitochondrial genome of Traulia minuta Huang & Xia, 1985 (Orthoptera: Catantopinae).

Project description:In the present study, we obtained and annotated the complete mitochondrial genome (mitogenome) of Traulia minuta. The length of the whole mitogenome was 15,636 bp and the AT content of the complete mitogenome was 74.5%. All protein-coding genes (PCGs) started with typical ATN codon and ended with complete TAA/TAG codons except Nad5, which ended with incomplete T codon. The phylogenetic tree indicated that T. minuta was clustered together with T. szetschuanensis.

| S-EPMC8259866 | biostudies-literature