Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Ruspolia yunnana (Orthoptera: Tettigoniidae: Conocephalinae).

ABSTRACT: The complete mitochondrial genome of Ruspolia yunnana was 15,794 bp and consisted of 37 genes and a control region. The A + T content of the mitogenome was as high as 71.3%. Most protein-coding genes started with the codon ATN and ended with stop codons TAA. Phylogenetic analyses based on mitogenomes suggested that Ruspolia yunnana and Ruspolia dubia have the closest genetic relationship. In general, this study provided meaningful genetic information for Ruspolia yunnana and validated the phylogenetic relationships within the Conocephalinae.

SUBMITTER: Liu J

PROVIDER: S-EPMC9487913 | biostudies-literature | 2022

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome of Ruspolia yunnana (Orthoptera: Tettigoniidae: Conocephalinae).

Liu Jing J Lu Xiangyi X Bian Xun X

Mitochondrial DNA. Part B, Resources 20220915 9

The complete mitochondrial genome of Ruspolia yunnana was 15,794 bp and consisted of 37 genes and a control region. The A + T content of the mitogenome was as high as 71.3%. Most protein-coding genes started with the codon ATN and ended with stop codons TAA. Phylogenetic analyses based on mitogenomes suggested that Ruspolia yunnana and Ruspolia dubia have the closest genetic relationship. In general, this study provided meaningful genetic information for Ruspolia yunnana< ...[more]

PMID: 36147376

Similar Datasets

Sequencing and analysis of the complete mitochondrial genome of Metrioptera bonneti (Orthoptera: Tettigoniidae).

Project description:Here, we report the complete mitochondrial genome sequence of Metrioptera bonneti and its phylogenetic status. The complete mitogenome of M. bonneti is 16,273 bp in size and consisted of 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and one D-loop. The overall nucleotide composition of the mitogenome was 35% A, 20.4% C, 11.7% G, and 32.9% T, with an A + T bias of 67.9%. Using the 13 PCGs and two rRNA of M. bonneti, together with 39 Tettigoniidae and two outgroup species, we constructed a phylogenetic tree based on the Bayesian inference method. The tree showed that M. bonneti forms a sister clade with Metrioptera ussuriana and supported the monophyly of Tettigoniinae.

| S-EPMC7799858 | biostudies-literature

Complete mitochondrial genome of Xiphidiopsis (Xiphidiopsis) gurneyi (Orthoptera, Tettigoniidae, Meconematinae).

Project description:Xiphidiopsis (Xiphidiopsis) gurneyi belongs to Meconematinae. The complete mitochondrial genome of X. (X.) gurneyi was sequenced by the next-generation sequencing (NGS) technology. The total length of the mitogenome was 16,225 bp and contains the typical gene arrangement, base composition, codon usage found in Meconematinae species. Phylogenetic tree was constructed based on concatenated datasets of PCGs and rRNAs of X. (X.) gurneyi and 19 Tettigoniidae species to assess their phylogenic relationship. Phylogenetic analysis showed that X. (X.) gurneyi was more closely related to the genus of Xizicus.

| S-EPMC7801005 | biostudies-literature

Complete mitochondrial genome of Conocephalus melaenus (Orthoptera: Tettigoniidae): a tRNA-like sequence on the J-strand.

Project description:In this study, the complete mitogenome sequence of Conocephalus melaenus (Orthoptera: Tettigoniidae) has been decoded for the first time by next generation sequencing method. The overall base composition of C. melaenus mitogenome are 37.1% for A, 17.3% for C, 11.1% for G and 34.4% for T, and has high AT content of 71.5%. The complete mitochondrial genome of C. melaenus is 15,923 bp in length, and consisted of 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes and one A + T-rich region. An unusual feature of the C. melaenus mitogenome is the presence of a tRNASer(UCN) -like sequence on the J-strand, and the tRNASer(UCN) -like sequence have proper folding structures and anticodons sequences. Using the 13 PCGs and 2 rRNA of C. melaenus, together with 17 other close-related and two outgroup species, we constructed Bayesian inference phylogenetic tree to verify the accuracy and utility of new determined mitogenome sequences. The complete mitogenome of C. melaenus provides valuable molecular data for further phylogenetic and evolutionary analysis in Tettigoniidae.

| S-EPMC7800076 | biostudies-literature

Characterization of the mitochondrial genome of Alloxiphidiopsis emarginata (Orthoptera, Tettigoniidae, Meconematinae).

Project description:The length of Alloxiphidiopsis emarginata complete mitogenome was 16,207 bp and contained the typical gene arrangement, base composition, codon usage found in other related species. The overall base composition exhibited obvious anti-G (10.6%) and AT bias (71.6%). The initiation codons of all PCGs were typical ATN (ATA/ATG/ATT), and the termination codons were TAA, TAG, or incomplete stop codon T. All tRNAs could be folded into typical cloverleaf secondary structures, except tRNASer (AGN). Phylogenetic analyses showed that A. emarginata was closer with Xizicus howardi.

| S-EPMC7707672 | biostudies-literature

Illumina next-generation sequencing reveals the mitochondrial genome of Ducetia japonica (Orthoptera: Tettigoniidae).

Project description:Using Illumina next-generation sequencing (NGS), the complete mitochondrial genome (mitogenome) of Ducetia japonica was sequenced in the present study. The mitogenome of D. japonica (Genbank accession no. KU885974) is 16,276 bp in size, had the typical invertebrate mitochondrial gene arrangement and containing 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNA), 2 ribosomal RNA genes (rRNA) and a control region. Except for the control region (868 bp), one novel larger intergenic (616 bp) was found between nad2 and trnW. Phylogenetic results unambiguously support the monophyly of Phaneropterinae, although the gene order of two Sinochlora species different with other Tettigoniidae species. Using Illumina NGS platforms for mitogenome sequencing will provide rather essential and important DNA molecular data for the further phylogenetic analysis across major ensiferan lineages.

| S-EPMC7799970 | biostudies-literature

Complete Mitochondrial Genome Sequence of Acrida cinerea (Acrididae: Orthoptera) and Comparative Analysis of Mitochondrial Genomes in Orthoptera.

Project description:The complete 15,599-bp mitogenome of Acrida cinerea was determined and compared with that of the other 20 orthopterans. It displays characteristic gene content, genome organization, nucleotide composition, and codon usage found in other Caelifera mitogenomes. Comparison of 21 orthopteran sequences revealed that the tRNAs encoded by the H-strand appear more conserved than those by the L-stand. All tRNAs form the typical clover-leaf structure except trnS (agn), and most of the size variation among tRNAs stemmed from the length variation in the arm and loop of TΨC and the loop of DHU. The derived secondary structure models of the rrnS and rrnL from 21 orthoptera species closely resemble those from other insects on CRW except a considerably enlarged loop of helix 1399 of rrnS in Caelifera, which is a potentially autapomorphy of Caelifera. In the A+T-rich region, tandem repeats are not only conserved in the closely related mitogenome but also share some conserved motifs in the same subfamily. A stem-loop structure, 16 bp or longer, is likely to be involved in replication initiation in Caelifera and Grylloidea. A long T-stretch (>17 bp) with conserved stem-loop structure next to rrnS on the H-strand, bounded by a purine at either end, exists in the three species from Tettigoniidae.

| S-EPMC3004375 | biostudies-literature

The complete mitochondrial genome of Fruhstorferiola tonkinensis (Orthoptera: Catantopidae).

Project description:Fruhstorferiola tonkinensis belongs to the group of Catantopidae, which is the largest group in Acridoidae. The complete mitochondrial genome (mitogenome) of Fruhstorferiola tonkinensis is 15,637 bp in length, including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA genes and 1 A + T-rich region. The gene order and arrangement are identical to other Acridoidae species. Most PCGs (except for the ATP6) start with the typical ATN codons, while most stop codons are TAA, TAG. The combined dataset of 13 PCGs and 2 rRNAs from 17 grasshoppers (including 15 Catantopidae species and 2 outgroups) is used to construct phylogenetic tree and analyse phylogenetic relationship of Catantopidae.

| S-EPMC7800193 | biostudies-literature

The complete mitochondrial genome of Fruhstorferiola huayinensis (Orthoptera: Catantopidae).

Project description:The complete mitochondrial genome of Fruhstorferiola huayinensis is 16 227 bp in length, and consisted of 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes and a control region. In control region, a tRNAIle-like sequence was identified. Additionally, a 259 bp long tandem repeat was identified in the control region. Using the 13 PCGs and 2 rRNA of F. huayinensis, together with 14 other close-related and 2 outgroup species, we constructed BI phylogenetic tree to verify the accuracy and utility of new determined mitogenome sequences.

| S-EPMC7871826 | biostudies-literature

The complete mitochondrial genome of Phlaeoba infumata (Orthoptera: Acrididae).

Project description:Phlaeoba infumata belongs to Acrididae, Orthoptera. The complete mitochondrial genome of P. infumata is 15,642 bp in length, and its arrangement was identical to the Locusta migratoria mitogenome, and contained 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes and a A + T-rich region. Using the 13 PCGs and two rRNA of P. infumata, together with 10 other close-related and two outgroup species, we constructed Bayesian inference (BI) phylogenetic tree to validate the mitogenome sequences of P. infumata.

| S-EPMC7800512 | biostudies-literature

The complete mitochondrial genome of Calliptamus abbreviatus Ikovnnikov (Orthoptera: acridoidea).

Project description:Calliptamus abbreviatus Ikovnnikov (Orthoptera: Acridoidea) is one of the important pests in the grasslands in northern China. The complete mitochondrial genome of this insect was sequenced. This genome is 16,615 bp long, with an AT content of 73.3%, containing 37 typical animal mitochondrial genes and an AT-rich region. All 13 PCGs share the start codon ATN, and the usual termination codons (TAA) are found from 13 protein-coding genes. All of the 22 typical animal tRNA genes were found in C. abbreviatus mt-genome, and most of the tRNAs could be folded into the classic cloverleaf secondary structure except for tRNA-Ser (AGN), which lacks the dihydrouracil (DHU) stem. The sizes of the large and small ribosomal RNA genes are 1555 and 799 bp long, respectively. The AT content of the AT-rich region is 87.0%. Phylogenetic analysis supports that the coleopteran insects from the same family cluster in the same group.

| S-EPMC7800107 | biostudies-literature