Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Analysis of complete mitochondrial genome of Ocypode cordimanus (Latreille, 1818) (Decapoda, Ocypodidae).

ABSTRACT: Complete mitochondrial genome of smooth-handed ghost crab Ocypode cordimanus (Latreille, 1818) has been sequenced and phylogenetic relationships evaluated due to mitochondrial protein coding genes. This is the second record of complete mitochondrial genome from the genus. The size of mitochondrial genome for O. cordimanus is 15,604?bp and the nucleotide distribution of the mitochondrial genome is 31.8% A, 21.8% C, 11.9% G and 34.5% T.

SUBMITTER: Sung JM

PROVIDER: S-EPMC7800992 | biostudies-literature | 2016 Jun

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Analysis of complete mitochondrial genome of Ocypode cordimanus (Latreille, 1818) (Decapoda, Ocypodidae).

Sung Jin-Mo JM Lee JeaHyun J Kim Seong-Geun SG Karagozlu Mustafa Zafer MZ Kim Chang-Bae CB

Mitochondrial DNA. Part B, Resources 20160620 1

Complete mitochondrial genome of smooth-handed ghost crab Ocypode cordimanus (Latreille, 1818) has been sequenced and phylogenetic relationships evaluated due to mitochondrial protein coding genes. This is the second record of complete mitochondrial genome from the genus. The size of mitochondrial genome for O. cordimanus is 15,604 bp and the nucleotide distribution of the mitochondrial genome is 31.8% A, 21.8% C, 11.9% G and 34.5% T. ...[more]

PMID: 33490393

Similar Datasets

Complete mitochondrial genome of Leptodius sanguineus (Decapoda, Xanthidae).

Project description:The complete mitochondrial genome sequenced from a xanthid crab, Leptodius sanguineus which was collected from a rocky intertidal area in Chuuk lagoon. The mitochondrial genome size of L. sanguineus evaluated as 15,480 bp with 33.6% A, 24% C, 11.2% G and 31.2% T and mitochondrial gene order of L. sanguineus is typical to brachyuran species. Phylogenetic analysis shows that the family Xanthidae has sister group relationship with a lineage including the families Portunidae and Menippidae in the subsection Heterotremata. This is the first report for the complete mitochondrial genome from the xanthid crabs.

| S-EPMC7799469 | biostudies-literature

The complete mitochondrial genome and phylogenetic analysis of Cancer pagurus (Decapoda, Cancridae).

Project description:The complete mitochondrial genome of Cancer pagurus was obtained using next-generation sequencing. The circular genome was 42,736?bp in length, consisting of 13 protein-coding genes, 26 transfer RNA genes, and 2 ribosomal RNA genes. The control region was not found in mitochondrial genome. Of the 41 genes, 21 were encoded by the heavy strand, while the others were encoded by the light strand. The genome composition with A?+?T bias (74.10%). The phylogenetic analysis suggested that C. pagurus was closest to Austinograea alayseae. The newly described mitochondrial genome may provide valuable data for phylogenetic analysis for Cancridae.

| S-EPMC7707713 | biostudies-literature

The complete mitochondrial genome and phylogenetic analysis of Cancer magister (Decapoda, Cancridae).

Project description:The complete mitochondrial (mt) genome of Cancer magister was obtained using next-generation sequencing. The circular genome was 39,658 bp in length, consisting of 13 protein-coding genes, 26 transfer RNA genes, and 2 ribosomal RNA genes. Unfortunately, the control region was not found in mitochondrial genome. Of the 41 genes, 24 were encoded by the heavy strand, while the others were encoded by the light strand. The genome composition with A + T bias (69.90%). The phylogenetic analysis showed that C. magister and Cancer pagurus was clustered together, then grouped with A. alayseae and Gandalfus puia, which may suggest Cancroidea was close with Bythograeidae. The newly described mitochondrial genome may provide valuable data for phylogenetic analysis for Cancridae.

| S-EPMC7707678 | biostudies-literature

The complete mitochondrial genome of Penaeus semisulcatus (Decapoda: Penaeidae).

Project description:The green tiger prawn, Penaeus semisulcatus, is one of the economically important penaeid shrimp due to its larger body size compared with other shrimps in Penaeidae family. However, the taxonomic revision studies of Penaeidae have been one of the most controversial issues in recent years. Moreover, there are at least two morphotypes of the green tiger prawn, one with banded antenna, another with non-banded antenna. In this study, we report the complete mitochondrial genome of P. semisulcatus. The mitogenome has 16,002 base pairs (68.6% A?+?T content) and made up of total of 37 genes (13 protein-coding, 22 transfer RNAs and 2 ribosomal RNAs), and a control region. This study adds one more available complete mitogenomes of Penaeus and will provide useful genetic information for future evolutionary and taxonomic classification of Penaeidae.

| S-EPMC7706530 | biostudies-literature

The complete mitochondrial genome of Scylla paramamosain (Decapoda: Portunidae).

Project description:The mud crab Scylla paramamosain (Decapoda:Portunidae) is a commercially important crustacean species in China, which is broadly distributed along the southeastern coastal regions of China. In previous studies, the population from Beibu Bay showed distinct genetic lineage. Here, we report the complete mitochondrial genome sequence of S. paramamosain from Beibu Bay. The mitogenome has 15,816 base pairs and made up of total of 37 genes (13 protein-coding, 22 transfer RNAs and 2 ribosomal RNAs), and a putative control region. The complete mitogenome in the Beibu Bay population was shorter than that in the Shenzhen population, because the non-coding region between tRNA-Glu and tRNA-His was shorter in the former, and there were 59 mutations sites between these two populations. This study adds a distinct mitogenomes of S. paramamosain and will provide useful genetic information for future genetic variation identification and genetic diversity evaluation of this economic valuable crab.

| S-EPMC7799674 | biostudies-literature

The complete mitochondrial genome of Thalamita sima (Decapoda: Portunidae).

Project description:Thalamita is one of most important genera of Portunidae. However, the systemically classification and taxonomic studies have so far been limited. In this study, we report the complete mitochondrial genome sequence of T. sima. The mitogenome has 15,831 base pairs (71.7% A?+?T content) and made up of total of 37 genes (13 protein-coding, 22 transfer RNAs and 2 ribosomal RNAs), and a putative control region. This study was the second available complete mitogenomes of Thalamita and will provide useful genetic information for future phylogenetic and taxonomic classification of Thalamita.

| S-EPMC7799605 | biostudies-literature

The complete mitochondrial genome of Thor amboinensis (Hippolytidae, Decapoda).

Project description:The complete mitochondrial genome of Thor amboinensis was obtained and described in this study. This complete mitochondrial genome is 15,553 bp in length and consists of 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. Twenty-two genes were encoded by the heavy strand. The overall base composition of the heavy-strand was 36.09% A, 12.36% G, 14.54% C, and 37.01% T, with a high G + C content of 26.90%. The phylogenetic analysis suggested that T. amboinensis was closest to Lebbeus groenlandicus. The newly described mitochondrial genome may provide valuable data for phylogenetic analysis for Hippolytidae.

| S-EPMC7782259 | biostudies-literature

The complete mitochondrial genome of Metapenaeopsis mogiensis (Decapoda: Penaeidae).

Project description:Metapenaeopsis is one of most important genera of Penaeidae. However, the systemically classification and taxonomic studies have so far been limited. In this study, we report the complete mitochondrial genome sequence of M. mogiensis. The mitogenome has 15,973 base pairs (66.7% A + T content) and made up of total of 37 genes (13 protein-coding, 22 transfer RNAs and two ribosomal RNAs), and a putative control region. This study was the second available complete mitogenomes of Metapenaeopsis and will provide useful genetic information for future phylogenetic and taxonomic classification of Metapenaeopsis.

| S-EPMC7510666 | biostudies-literature

The complete mitochondrial genome of Parapenaeopsis hungerfordi (Decapoda: Penaeidae).

Project description:The dog shrimp, Parapenaeopsis hungerfordi, is an important commercial fishery species throughout the Indo-west Pacific. However, the resource of Penaeid shrimps, including P. hungerfordi decreased steadily in the recent years. Moreover, adequate mitogenome information about P. hungerfordi is still missing. In this study, we report the complete mitochondrial genome sequence of P. hungerfordi. The mitogenome has 15,952 base pairs (66.7% A + T content) and is made up of a total of 37 genes (13 protein-coding, 22 transfer RNAs, and 2 ribosomal RNAs), and a control region. The complete mitogenomes of P. hungerfordi will provide useful genetic information for future phylogenetic and taxonomic classification of Penaeidae.

| S-EPMC7800401 | biostudies-literature

The complete mitochondrial genome and phylogenetic analysis of Matuta planipes (Decapoda: Brachyura: Matutidae).

Project description:The complete mitochondrial genome of Matuta planipes was obtained using long and conventional PCR method. The circular genome was 15,760?bp in length, consisting of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and a control region. Of the 37 genes, 23 were encoded by the heavy strand, while the others were encoded by the light strand. The genome composition with A?+?T bias (70.82%) and gene arrangement were largely identical to those observed in most arthropods, such as the mud crab (Scylla paramamosain). The phylogenetic analysis suggested that M. planipes was closest to Ashtoret lunaris. The newly described mitochondrial genome may provide valuable data for phylogenetic analysis for Matutidae.

| S-EPMC7800499 | biostudies-literature