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Transformative Network Modeling of Multi-omics Data Reveals Detailed Circuits, Key Regulators, and Potential Therapeutics for Alzheimer's Disease.


ABSTRACT: To identify the molecular mechanisms and novel therapeutic targets of late-onset Alzheimer's Disease (LOAD), we performed an integrative network analysis of multi-omics profiling of four cortical areas across 364 donors with varying cognitive and neuropathological phenotypes. Our analyses revealed thousands of molecular changes and uncovered neuronal gene subnetworks as the most dysregulated in LOAD. ATP6V1A was identified as a key regulator of a top-ranked neuronal subnetwork, and its role in disease-related processes was evaluated through CRISPR-based manipulation in human induced pluripotent stem cell-derived neurons and RNAi-based knockdown in Drosophila models. Neuronal impairment and neurodegeneration caused by ATP6V1A deficit were improved by a repositioned compound, NCH-51. This study provides not only a global landscape but also detailed signaling circuits of complex molecular interactions in key brain regions affected by LOAD, and the resulting network models will serve as a blueprint for developing next-generation therapeutic agents against LOAD.

SUBMITTER: Wang M 

PROVIDER: S-EPMC7855384 | biostudies-literature | 2021 Jan

REPOSITORIES: biostudies-literature

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Transformative Network Modeling of Multi-omics Data Reveals Detailed Circuits, Key Regulators, and Potential Therapeutics for Alzheimer's Disease.

Wang Minghui M   Li Aiqun A   Sekiya Michiko M   Beckmann Noam D ND   Quan Xiuming X   Schrode Nadine N   Fernando Michael B MB   Yu Alex A   Zhu Li L   Cao Jiqing J   Lyu Liwei L   Horgusluoglu Emrin E   Wang Qian Q   Guo Lei L   Wang Yuan-Shuo YS   Neff Ryan R   Song Won-Min WM   Wang Erming E   Shen Qi Q   Zhou Xianxiao X   Ming Chen C   Ho Seok-Man SM   Vatansever Sezen S   Kaniskan H Ümit HÜ   Jin Jian J   Zhou Ming-Ming MM   Ando Kanae K   Ho Lap L   Slesinger Paul A PA   Yue Zhenyu Z   Zhu Jun J   Katsel Pavel P   Gandy Sam S   Ehrlich Michelle E ME   Fossati Valentina V   Noggle Scott S   Cai Dongming D   Haroutunian Vahram V   Iijima Koichi M KM   Schadt Eric E   Brennand Kristen J KJ   Zhang Bin B  

Neuron 20201124 2


To identify the molecular mechanisms and novel therapeutic targets of late-onset Alzheimer's Disease (LOAD), we performed an integrative network analysis of multi-omics profiling of four cortical areas across 364 donors with varying cognitive and neuropathological phenotypes. Our analyses revealed thousands of molecular changes and uncovered neuronal gene subnetworks as the most dysregulated in LOAD. ATP6V1A was identified as a key regulator of a top-ranked neuronal subnetwork, and its role in d  ...[more]

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