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Enhanced streamflow prediction with SWAT using support vector regression for spatial calibration: A case study in the Illinois River watershed, U.S.

ABSTRACT: Accurate streamflow prediction plays a pivotal role in hydraulic project design, nonpoint source pollution estimation, and water resources planning and management. However, the highly non-linear relationship between rainfall and runoff makes prediction difficult with desirable accuracy. To improve the accuracy of monthly streamflow prediction, a seasonal Support Vector Regression (SVR) model coupled to the Soil and Water Assessment Tool (SWAT) model was developed for 13 subwatersheds in the Illinois River watershed (IRW), U.S. Terrain, precipitation, soil, land use and land cover, and monthly streamflow data were used to build the SWAT model. SWAT Streamflow output and the upstream drainage area were used as two input variables into SVR to build the hybrid SWAT-SVR model. The Calibration Uncertainty Procedure (SWAT-CUP) and Sequential Uncertainty Fitting-2 (SUFI-2) algorithms were applied to compare the model performance against SWAT-SVR. The spatial calibration and leave-one-out sampling methods were used to calibrate and validate the hybrid SWAT-SVR model. The results showed that the SWAT-SVR model had less deviation and better performance than SWAT-CUP simulations. SWAT-SVR predicted streamflow more accurately during the wet season than the dry season. The model worked well when it was applied to simulate medium flows with discharge between 5 m3 s-1 and 30 m3 s-1, and its applicable spatial scale fell between 500 to 3000 km2. The overall performance of the model on yearly time series is "Satisfactory". This new SWAT-SVR model has not only the ability to capture intrinsic non-linear behaviors between rainfall and runoff while considering the mechanism of runoff generation but also can serve as a reliable regional tool for an ungauged or limited data watershed that has similar hydrologic characteristics with the IRW.

SUBMITTER: Yuan L

PROVIDER: S-EPMC8041176 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:BACKGROUND:The residue-wise contact order (RWCO) describes the sequence separations between the residues of interest and its contacting residues in a protein sequence. It is a new kind of one-dimensional protein structure that represents the extent of long-range contacts and is considered as a generalization of contact order. Together with secondary structure, accessible surface area, the B factor, and contact number, RWCO provides comprehensive and indispensable important information to reconstructing the protein three-dimensional structure from a set of one-dimensional structural properties. Accurately predicting RWCO values could have many important applications in protein three-dimensional structure prediction and protein folding rate prediction, and give deep insights into protein sequence-structure relationships. RESULTS:We developed a novel approach to predict residue-wise contact order values in proteins based on support vector regression (SVR), starting from primary amino acid sequences. We explored seven different sequence encoding schemes to examine their effects on the prediction performance, including local sequence in the form of PSI-BLAST profiles, local sequence plus amino acid composition, local sequence plus molecular weight, local sequence plus secondary structure predicted by PSIPRED, local sequence plus molecular weight and amino acid composition, local sequence plus molecular weight and predicted secondary structure, and local sequence plus molecular weight, amino acid composition and predicted secondary structure. When using local sequences with multiple sequence alignments in the form of PSI-BLAST profiles, we could predict the RWCO distribution with a Pearson correlation coefficient (CC) between the predicted and observed RWCO values of 0.55, and root mean square error (RMSE) of 0.82, based on a well-defined dataset with 680 protein sequences. Moreover, by incorporating global features such as molecular weight and amino acid composition we could further improve the prediction performance with the CC to 0.57 and an RMSE of 0.79. In addition, combining the predicted secondary structure by PSIPRED was found to significantly improve the prediction performance and could yield the best prediction accuracy with a CC of 0.60 and RMSE of 0.78, which provided at least comparable performance compared with the other existing methods. CONCLUSION:The SVR method shows a prediction performance competitive with or at least comparable to the previously developed linear regression-based methods for predicting RWCO values. In contrast to support vector classification (SVC), SVR is very good at estimating the raw value profiles of the samples. The successful application of the SVR approach in this study reinforces the fact that support vector regression is a powerful tool in extracting the protein sequence-structure relationship and in estimating the protein structural profiles from amino acid sequences.

Dataset Information

Enhanced streamflow prediction with SWAT using support vector regression for spatial calibration: A case study in the Illinois River watershed, U.S.

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