Risks posed by SARS-CoV-2 to North American bats during winter fieldwork.
Ontology highlight
ABSTRACT:
SUBMITTER: Cook JD
PROVIDER: S-EPMC8250205 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:During the winters of 2013-2014 and 2014-2015, anomalously warm temperatures in western North America and anomalously cool temperatures in eastern North America resulted in substantial human and environmental impacts. Motivated by the impacts of these concurrent temperature extremes and the intrinsic atmospheric linkage between weather conditions in the western and eastern United States, we investigate the occurrence of concurrent "warm-West/cool-East" surface temperature anomalies, which we call the "North American winter temperature dipole." We find that, historically, warm-West/cool-East dipole conditions have been associated with anomalous mid-tropospheric ridging over western North America and downstream troughing over eastern North America. We also find that the occurrence and severity of warm-West/cool-East events have increased significantly between 1980 and 2015, driven largely by an increase in the frequency with which high-amplitude "ridge-trough" wave patterns result in simultaneous severe temperature conditions in both the West and East. Using a large single-model ensemble of climate simulations, we show that the observed positive trend in the warm-West/cool-East events is attributable to historical anthropogenic emissions including greenhouse gases, but that the co-occurrence of extreme western warmth and eastern cold will likely decrease in the future as winter temperatures warm dramatically across the continent, thereby reducing the occurrence of severely cold conditions in the East. Although our analysis is focused on one particular region, our analysis framework is generally transferable to the physical conditions shaping different types of extreme events around the globe.
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Project description:As the emergence of new variants of SARS-CoV-2 persists across the world, it is of importance to understand the distributional behavior of the incubation period of the variants for both medical research and public health policy-making. We collected the published individual-level data of 941 patients of the 2020-2021 winter pandemic wave in Hebei province, North China. We computed some epidemiological characteristics of the wave and estimated the distribution of the incubation period. We further assessed the covariate effects of sex, age, and living with a case with respect to the incubation period by a model. The infection-fatality rate was only 0.1%. The estimated median incubation period was at least 22 days, significantly extended from the estimates (ranging from 4 to 8.5 days) of the previous wave in mainland China and those ever reported elsewhere around the world. The proportion of asymptomatic patients was 90.6%. No significant covariate effect was found. The distribution of incubation period of the new variants showed a clear extension from their early generations.
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Project description:Bats are the reservoir for a large number of zoonotic viruses, including members of Coronaviridae (severe acute respiratory syndrome coronavirus [SARS-CoV] and SARS-CoV-2), Paramyxoviridae (Hendra and Nipah viruses), Rhabdoviridae (rabies virus), and Filoviridae (Ebola virus) as exemplars. Many retroviruses, such as human immunodeficiency virus, are similarly zoonotic; however, only infectious exogenous gammaretroviruses have recently been identified in bats. Here, viral metagenomic sequencing of samples from bats submitted for rabies virus testing, largely due to human exposure, identified a novel, highly divergent exogenous Deltaretrovirus from a big brown bat (Eptesicus fuscus) in South Dakota. The virus sequence, corresponding to Eptesicus fuscus deltaretrovirus (EfDRV), comprised a nearly complete coding region comprised of canonical 5'-gag-pro-pol-env-3' genes with 37% to 51% identity to human T-lymphotropic virus (HTLV), an infectious retrovirus that causes T-cell lymphoma. A putative tax gene with 27% identity to HTLV was located downstream of the pol gene along with a gene harbored in an alternative reading frame which possessed a conserved domain for an Epstein-Barr virus nuclear antigen involved in gene transactivation, suggesting a regulatory function similar to that of the deltaretrovirus rex gene. A TaqMan reverse transcriptase PCR (RT-PCR) targeting the pol gene identified 4/60 (6.7%) bats as positive for EfDRV, which, combined with a search of the E. fuscus genome that failed to identify sequences with homology to EfDRV, suggests that EfDRV is an infectious exogenous virus. As all known members of Deltaretrovirus can cause malignancies and E. fuscus is widely distributed in the Americas, often with a colonial roosting behavior in human dwellings, further studies are needed to investigate potential zoonosis.IMPORTANCE Bats host a large numbers of viruses, many of which are zoonotic. In the United States, the big brown bat (Eptesicus fuscus) is widely distributed and lives in small colonies that roost in cavities, often in human dwellings, leading to frequent human interaction. Viral metagenomic sequencing of samples from an E. fuscus bat submitted for rabies testing identified the first exogenous bat Deltaretrovirus The E. fuscus deltaretrovirus (EfDRV) genome consists of the typical deltaretrovial 5'-gag-pro-pol-env-3' genes along with genes encoding two putative transcriptional transactivator proteins distantly related to the Tax protein of human T-cell lymphotrophic virus and nuclear antigen 3B of Epstein-Barr virus. Searches of the E. fuscus genome sequence failed to identify endogenous EfDRV. RT-PCR targeting the EfDRV pol gene identified 4/60 (6.7%) bats with positive results. Together, these results suggest that EfDRV is exogenous. As all members of Deltaretrovirus are associated with T- and B-cell malignancies or neurologic disease, further studies on possible zoonosis are warranted.
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