Dataset Information

The complete mitogenome of Lophops carinata (Hemiptera: Fulgoroidea: Lophopidae).

ABSTRACT: In the present study, the complete mitochondrial genome of Lophops carinata (Hemiptera: Lophopidae) was sequenced for the first time through next-generation sequencing. The complete mitogenome of L. carinata is 15,553 bp in length, with the typical gene content and arrangement usually observed in Hexapods. The mitogenome consisted of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 1 D-loop. The overall nucleotide composition of the mitogenome was 44.6% A, 14.0% C, 8.3% G, and 33.2% T, with an A + T bias of 77.8%. Phylogenetic analyses from 12 Fulgoroidea species by maximum likelihood were consistent and well supported the basal position of Delphacidae, a close affinity among the families Ricaniidae, Issidae, and Flatidae, and a close relationship between Achilidae and Fulgoridae. And L. carinata belong to a separate lineage, located in the middle of the phylogenetic tree.

SUBMITTER: Xu SY

PROVIDER: S-EPMC8253208 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature

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The complete mitogenome of Lophops carinata (Hemiptera: Fulgoroidea: Lophopidae).

Xu Shi-Yan SY Chen Xiang-Sheng XS

Mitochondrial DNA. Part B, Resources 20210701 8

In the present study, the complete mitochondrial genome of Lophops carinata (Hemiptera: Lophopidae) was sequenced for the first time through next-generation sequencing. The complete mitogenome of L. carinata is 15,553 bp in length, with the typical gene content and arrangement usually observed in Hexapods. The mitogenome consisted of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 1 D-loop. The overall nucleotide composition of the mitogenome was 44.6% A, 14.0% C, ...[more]

PMID: 34263036

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Project description:BackgroundCoelidiinae, a relatively large subfamily within the family Cicadellidae, includes 129 genera and ∼1,300 species distributed worldwide. However, the mitogenomes of only two species (Olidiana sp. and Taharana fasciana) in the subfamily Coelidiinae have been assembled. Here, we report the first complete mitogenome assembly of the genus Olidiana.MethodsSpecimens were collected from Wenxian County (Gansu Province, China) and identified on the basis of their morphology. Mitogenomes were sequenced by next-generation sequencing, following which an NGS template was generated, and this was confirmed using polymerase chain reaction and Sanger sequencing. Phylogenic trees were constructed using maximum likelihood and Bayesian analyses.ResultsThe mitogenome of O. ritcheriina was 15,166 bp long, with an A + T content of 78.0%. Compared with the mitogenome of other Cicadellidae sp., the gene order, gene content, gene size, base composition, and codon usage of protein-coding genes (PCGs) in O. ritcheriina were highly conserved. The standard start codon of all PCGs was ATN and stop codon was TAA or TAG; COII, COIII, and ND4L ended with a single T. All tRNA genes showed the typical cloverleaf secondary structure, except for trnSer, which did not have the dihydrouridine arm. Furthermore, the secondary structures of rRNAs (rrnL and rrnS) in O. ritcheriina were predicted. Overall, five domains and 42 helices were predicted for rrnL (domain III is absent in arthropods), and three structural domains and 27 helices were predicted for rrnS. Maximum likelihood and Bayesian analyses indicated that O. ritcheriina and other Coelidiinae members were clustered into a clade, indicating the relationships among their subfamilies; the main topology was as follows: (Deltocephalinae + ((Coelidiinae + Iassinae) + ((Typhlocybinae + Cicadellinae) + (Idiocerinae + (Treehopper + Megophthalminae))))). The phylogenetic relationships indicated that the molecular taxonomy of O. ritcheriina is consistent with the current morphological classification.

Dataset Information

The complete mitogenome of Lophops carinata (Hemiptera: Fulgoroidea: Lophopidae).

Publications

The complete mitogenome of <i>Lophops carinata</i> (Hemiptera: Fulgoroidea: Lophopidae).

Similar Datasets

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