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Modeling the Optical Properties of a Polyvinyl Alcohol-Based Composite Using a Particle Swarm Optimized Support Vector Regression Algorithm.

ABSTRACT: We developed particle swarm optimization-based support vector regression (PSVR) and ordinary linear regression (OLR) models for estimating the refractive index (n) and energy gap (E) of a polyvinyl alcohol composite. The n-PSVR model, which can estimate the refractive index of a polyvinyl alcohol composite using the energy gap as a descriptor, performed better than the n-OLR model in terms of root mean square error (RMSE) and mean absolute error (MAE) metrics. The E-PSVR model, which can predict the energy gap of a polyvinyl alcohol composite using its refractive index descriptor, outperformed the E-OLR model, which uses similar descriptor based on several performance measuring metrics. The n-PSVR and E-PSVR models were used to investigate the influences of sodium-based dysprosium oxide and benzoxazinone derivatives on the energy gaps of a polyvinyl alcohol polymer composite. The results agreed well with the measured values. The models had low mean absolute percentage errors after validation with external data. The precision demonstrated by these predictive models will enhance the tailoring of the optical properties of polyvinyl alcohol composites for the desired applications. Costs and experimental difficulties will be reduced.

SUBMITTER: Owolabi TO

PROVIDER: S-EPMC8402182 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:BACKGROUND:During procedures for conducting multiple sequence alignment, that is so essential to use the substitution score of pairwise alignment. To compute adaptive scores for alignment, researchers usually use Hidden Markov Model or probabilistic consistency methods such as partition function. Recent studies show that optimizing the parameters for hidden Markov model, as well as integrating hidden Markov model with partition function can raise the accuracy of alignment. The combination of partition function and optimized HMM, which could further improve the alignment's accuracy, however, was ignored by these researches. RESULTS:A novel algorithm for MSA called ProbPFP is presented in this paper. It intergrate optimized HMM by particle swarm with partition function. The algorithm of PSO was applied to optimize HMM's parameters. After that, the posterior probability obtained by the HMM was combined with the one obtained by partition function, and thus to calculate an integrated substitution score for alignment. In order to evaluate the effectiveness of ProbPFP, we compared it with 13 outstanding or classic MSA methods. The results demonstrate that the alignments obtained by ProbPFP got the maximum mean TC scores and mean SP scores on these two benchmark datasets: SABmark and OXBench, and it got the second highest mean TC scores and mean SP scores on the benchmark dataset BAliBASE. ProbPFP is also compared with 4 other outstanding methods, by reconstructing the phylogenetic trees for six protein families extracted from the database TreeFam, based on the alignments obtained by these 5 methods. The result indicates that the reference trees are closer to the phylogenetic trees reconstructed from the alignments obtained by ProbPFP than the other methods. CONCLUSIONS:We propose a new multiple sequence alignment method combining optimized HMM and partition function in this paper. The performance validates this method could make a great improvement of the alignment's accuracy.

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Modeling the Optical Properties of a Polyvinyl Alcohol-Based Composite Using a Particle Swarm Optimized Support Vector Regression Algorithm.

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