Dataset Information

A long-term reconstructed TROPOMI solar-induced fluorescence dataset using machine learning algorithms.

ABSTRACT: Photosynthesis is a key process linking carbon and water cycles, and satellite-retrieved solar-induced chlorophyll fluorescence (SIF) can be a valuable proxy for photosynthesis. The TROPOspheric Monitoring Instrument (TROPOMI) on the Copernicus Sentinel-5P mission enables significant improvements in providing high spatial and temporal resolution SIF observations, but the short temporal coverage of the data records has limited its applications in long-term studies. This study uses machine learning to reconstruct TROPOMI SIF (RTSIF) over the 2001-2020 period in clear-sky conditions with high spatio-temporal resolutions (0.05° 8-day). Our machine learning model achieves high accuracies on the training and testing datasets (R² = 0.907, regression slope = 1.001). The RTSIF dataset is validated against TROPOMI SIF and tower-based SIF, and compared with other satellite-derived SIF (GOME-2 SIF and OCO-2 SIF). Comparing RTSIF with Gross Primary Production (GPP) illustrates the potential of RTSIF for estimating gross carbon fluxes. We anticipate that this new dataset will be valuable in assessing long-term terrestrial photosynthesis and constraining the global carbon budget and associated water fluxes.

SUBMITTER: Chen X

PROVIDER: S-EPMC9300726 | biostudies-literature | 2022 Jul

REPOSITORIES: biostudies-literature

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A long-term reconstructed TROPOMI solar-induced fluorescence dataset using machine learning algorithms.

Chen Xingan X Huang Yuefei Y Nie Chong C Zhang Shuo S Wang Guangqian G Chen Shiliu S Chen Zhichao Z

Scientific data 20220720 1

Photosynthesis is a key process linking carbon and water cycles, and satellite-retrieved solar-induced chlorophyll fluorescence (SIF) can be a valuable proxy for photosynthesis. The TROPOspheric Monitoring Instrument (TROPOMI) on the Copernicus Sentinel-5P mission enables significant improvements in providing high spatial and temporal resolution SIF observations, but the short temporal coverage of the data records has limited its applications in long-term studies. This study uses machine learnin ...[more]

PMID: 35859094

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Project description:BackgroundAcute kidney injury (AKI) is a common adverse outcome following nephrectomy. The progression from AKI to acute kidney disease (AKD) and subsequently to chronic kidney disease (CKD) remains a concern; yet, the predictive mechanisms for these transitions are not fully understood. Interpretable machine learning (ML) models offer insights into how clinical features influence long-term renal function outcomes after nephrectomy, providing a more precise framework for identifying patients at risk and supporting improved clinical decision-making processes.ObjectiveThis study aimed to (1) evaluate postnephrectomy rates of AKI, AKD, and CKD, analyzing long-term renal outcomes along different trajectories; (2) interpret AKD and CKD models using Shapley Additive Explanations values and Local Interpretable Model-Agnostic Explanations algorithm; and (3) develop a web-based tool for estimating AKD or CKD risk after nephrectomy.MethodsWe conducted a retrospective cohort study involving patients who underwent nephrectomy between July 2012 and June 2019. Patient data were randomly split into training, validation, and test sets, maintaining a ratio of 76.5:8.5:15. Eight ML algorithms were used to construct predictive models for postoperative AKD and CKD. The performance of the best-performing models was assessed using various metrics. We used various Shapley Additive Explanations plots and Local Interpretable Model-Agnostic Explanations bar plots to interpret the model and generated directed acyclic graphs to explore the potential causal relationships between features. Additionally, we developed a web-based prediction tool using the top 10 features for AKD prediction and the top 5 features for CKD prediction.ResultsThe study cohort comprised 1559 patients. Incidence rates for AKI, AKD, and CKD were 21.7% (n=330), 15.3% (n=238), and 10.6% (n=165), respectively. Among the evaluated ML models, the Light Gradient-Boosting Machine (LightGBM) model demonstrated superior performance, with an area under the receiver operating characteristic curve of 0.97 for AKD prediction and 0.96 for CKD prediction. Performance metrics and plots highlighted the model's competence in discrimination, calibration, and clinical applicability. Operative duration, hemoglobin, blood loss, urine protein, and hematocrit were identified as the top 5 features associated with predicted AKD. Baseline estimated glomerular filtration rate, pathology, trajectories of renal function, age, and total bilirubin were the top 5 features associated with predicted CKD. Additionally, we developed a web application using the LightGBM model to estimate AKD and CKD risks.ConclusionsAn interpretable ML model effectively elucidated its decision-making process in identifying patients at risk of AKD and CKD following nephrectomy by enumerating critical features. The web-based calculator, found on the LightGBM model, can assist in formulating more personalized and evidence-based clinical strategies.

Dataset Information

A long-term reconstructed TROPOMI solar-induced fluorescence dataset using machine learning algorithms.

Publications

A long-term reconstructed TROPOMI solar-induced fluorescence dataset using machine learning algorithms.

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