Unmapped structural variants in the zebrafish genome

ABSTRACT: While genome resources for zebrafish have allowed for major advances in a variety of fields of research, the current genome build remains incomplete. GRCz10 was developed using AB and Tuebingen lab strains. In this study, we isolated unmappable reads from a wild strain sequenced in a previously published dataset. We were able to assemble these reads, map many contigs to their respective genomic loci, and identify orthologies to genetic content previously unknown in the zebrafish genome.

ORGANISM(S): Danio rerio

SUBMITTER: Brown KH 

PROVIDER: S-BSMS1 | biostudies-other |

REPOSITORIES: biostudies-other