AffyPipe: an open-source pipeline for Affymetrix Axiom genotyping workflow.
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ABSTRACT:
SUBMITTER: Nicolazzi EL
PROVIDER: S-EPMC4609010 | biostudies-other | 2014 Nov
REPOSITORIES: biostudies-other
Publications
AffyPipe: an open-source pipeline for Affymetrix Axiom genotyping workflow.
Nicolazzi Ezequiel L EL Iamartino Daniela D Williams John L JL
Bioinformatics (Oxford, England) 20140715 21
<h4>Unlabelled</h4>The Affymetrix Axiom genotyping standard and 'best practice' workflow for Linux and Mac users consists of three stand-alone executable programs (Affymetrix Power Tools) and an R package (SNPolisher). Currently, SNP analysis has to be performed in a step-by-step procedure. Manual intervention and/or programming skills by the user is required at each intermediate point, as Affymetrix Power Tools programs do not produce input files for the program next-in-line. An additional prob ...[more]
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