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Whole Genome Resequencing in North American Atlantic salmon

ABSTRACT: We performed high coverage whole genome re-sequencing of 80 North American Atlantic salmon individuals from three aquaculture stocks that are propagated in the USDA-ARS National Cold Water Marine Aquaculture Center (NCWMAC). The sequence data was used for SNP discovery and the resulting SNP database provides an important resource for a new high density SNP array design and other SNP genotyping platforms used in various genetic and genomics studies of North American Atlantic salmon.

INSTRUMENT(S): -

ORGANISM(S): Salmo Salar

SUBMITTER: National Center for Cool and Cold Water Aquaculture

PROVIDER: PRJEB34225 | EVA | 2019-09-03

REPOSITORIES: EVA

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Dataset's files

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			Action	DRS
	Salmon_SNP_80_samples_freebayes_EBI_noINFO.accessioned.vcf.gz	Vcf
	Salmon_SNP_80_samples_freebayes_EBI_noINFO.vcf.gz	Vcf
	Salmon_SNP_80_samples_freebayes_EBI_noINFO.vcf.gz.tbi	Vcf
	Salmon_SNP_80_samples_gatk_EBI_noINFO.accessioned.vcf.gz	Vcf
	Salmon_SNP_80_samples_gatk_EBI_noINFO.vcf.gz	Vcf

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