Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

A 31-bp indel in the 5UTR of the chicken GNB1L gene.

ABSTRACT: Tuanhui_et_al_2020: A 31-bp indel in the 5UTR of the chicken GNB1L gene.

INSTRUMENT(S): Illumina HiSeq 4000

ORGANISM(S): Gallus Gallus

SUBMITTER: College of Animal Science, South China Agricultural University

PROVIDER: PRJEB36864 | EVA | 2021-10-19

REPOSITORIES: EVA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	indel_in_GNB1L.accessioned.vcf.gz	Vcf
	indel_in_GNB1L.accessioned.vcf.gz.csi	Vcf
	indel_in_GNB1L.accessioned.vcf.gz.tbi	Vcf
	indel_in_GNB1L.vcf.gz	Vcf
	indel_in_GNB1L.vcf.gz.tbi	Vcf

Items per page:

1 - 5 of 5

Similar Datasets

A 51-bp indel in the first intron of the chicken PTH1R gene.

Project description:Tuanhui_et_al_2019: A 51-bp indel in the first intron of the chicken PTH1R gene.

2020-01-27 | PRJEB36115 | EVA

A 173-bp indel in the promoter region of the chicken GSTA2 gene.

Project description:Tuanhui_et_al_2024: A 173-bp indel in the promoter region of the chicken GSTA2 gene.

2024-04-15 | PRJEB74769 | EVA

BP-002

Project description:BP-002

| PRJEB42454 | ENA

Methanomicrobium mobile BP strain:BP

Project description:Methanomicrobium mobile BP strain:BP Genome sequencing and assembly

| PRJNA223456 | ENA

A Novel 65-bp Indel in the GOLGB1 Gene Is Associated with Chicken Growth and Carcass Traits.

Project description:Golgin subfamily B member 1 (GOLGB1) gene encodes the coat protein 1 vesicle inhibiting factor, giantin. Previous study showed that mutations of the GOLGB1 gene are associated with dozens of human developmental disorders and diseases. However, the biological function of GOLGB1 gene in chicken is still unclear. In this study, we detected a novel 65-bp insertion/deletion (indel) polymorphism in the chicken GOLGB1 intron 5. Association of this indel with chicken growth and carcass traits was analyzed in a yellow chicken population. Results showed that this 65-bp indel was significantly associated with chicken body weight (p < 0.05), highly significantly associated with neck weight, abdominal fat weight, abdominal fat percentage and the yellow index b of breast (p < 0.01). Analysis of genetic parameters indicated that "I" was the predominant allele. Except for the yellow index b of breast, II genotype individuals had the best growth characteristics, by comparison with the ID genotype and DD genotype individuals. Moreover, the mRNA expression of GOLGB1 was detected in the liver tissue of chicken with different GOLGB1 genotypes, where the DD genotype displayed high expression levels. These findings hinted that the 65-bp indel in GOLGB1 could be assigned to a molecular marker in chicken breeding and enhance production in the chicken industry.

| S-EPMC7142648 | biostudies-literature

Indel array-based genotyping of pupariation site preference among Drosophila sechellia backcross progeny

Project description:We identified 6,975 insertion/deletion events of between 10 and 100 bp in length from the Drosophila simulans and Drosophila sechellia Mercator/MAVID genomic sequence alignment. Replicate pure samples of Drosophila simulans and Drosophila sechellia gDNA were competitively hybridized to measure the expected relative hybridization intensity of alleles from each species. We used these measured intensities to assess the likelihood that the hybridization signal at each probe in an experimental animal reflected homozygosity or heterozygosity at that locus. Indel array Agilent-022089 sim-sech.v.1.3

2013-02-26 | E-GEOD-44443 | biostudies-arrayexpress

Project description:A 31-bp indel in the 5UTR of the chicken GNB1L gene.

| PRJEB36864 | ENA

Two 23-bp indels in the promoter of the chicken NUDT15 gene.

Project description:Chengjie_et_al_2020: Two 23-bp indels in the promoter of the chicken NUDT15 gene.

2021-10-08 | PRJEB47912 | EVA

Project description:A 51-bp indel in the first intron of the chicken PTH1R gene.

| PRJEB36115 | ENA

Project description:A 173-bp indel in the promoter region of the chicken GSTA2 gene.

| PRJEB74769 | ENA