Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Investigation of chicken genetic variants

ABSTRACT: An investigation into a sub set of indigenous chicken genetic variantion

INSTRUMENT(S): -

ORGANISM(S): Gallus Gallus

SUBMITTER: ZAAS

PROVIDER: PRJEB71347 | EVA | 2023-12-19

REPOSITORIES: EVA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	raw_variants.accessioned.vcf.gz	Vcf
	raw_variants.accessioned.vcf.gz.csi	Vcf
	raw_variants.vcf.csi	Other
	raw_variants.vcf.gz	Vcf

Items per page:

1 - 4 of 4

Similar Datasets

Investigation of cattle genetic variants

Project description:An investigation into a sub set of cattle genetic variantion

| PRJEB75603 | ENA

Seminal plasma proteome of chicken with different sperm motility

Project description:We characterized the seminal plasma proteome of eight Beijing-you (BJY) chickens, an indigenous chicken breed in China, differ in sperm motility.

2020-04-24 | PXD016220 | Pride

Hypoxia effect on embryonic hearts of Tibetan Chicken, Dwarf Recessive White Chicken and Shouguang Chicken

2009-09-05 | GSE12675 | GEO

Fold change of expression in Aseel (an indigenous chicken breed) as compared to broiler chicken in 7th day of embryonic stage

Project description:The expression of genes were analysed in 7th day of embryonic stage between Aseel, an indigenous slow-growing chicken, and control broiler, a fast-growing broiler chicken line. The whole embryo was collected in TRIZOL and total RNA was isolated. The expression profile of gene was determined in 64k Agilent chicken microarray chip. The Cy3 dye was used for detection. The fold change of expression was analysed in Aseel as compared to broiler chicken line.

2014-10-17 | GSE62443 | GEO

Investigation of barley genetic variants

Project description:An investigation into a sub set of barley genetic variantion

2023-01-20 | PRJEB59041 | EVA

Investigation of cattle genetic variants

Project description:An investigation into a sub set of cattle genetic variantion

2024-06-05 | PRJEB53221 | EVA

Investigation of Duck genetic variants

Project description:An investigation into a sub set of duck genetic variantion

2023-03-18 | PRJEB43764 | EVA

Investigation of rice genetic variants

Project description:An investigation into a sub set of rice genetic variantion

2022-08-13 | PRJEB55326 | EVA

Investigation of dugong genetic variants

Project description:An investigation into a sub set of dugong genetic variantion

2024-08-26 | PRJEB79357 | EVA

Transcription profiling of chicken embryonic hears from Tibetan Chicken, Dwarf Recessive White Chicken and Shouguang Chicken

Project description:Adaptation to hypoxia is a complicated and important physiological course for organisms, but the genetic mechanism underlying the adaptation is not fully understood yet. Tibetan Chicken (T), an indigenous chicken breed in China which inhabit in high areas with an altitude above 2,900 meters. Shouguang Chicken(S) and Dwarf Recessive White Chicken (DRW), two lowland chicken breeds, were used as control groups. The heart was the first functional organ to develop during the embryonic development. Furthermore, the heart is an efficient energy converter utilizing the most appropriate fuel for a given environment. Therefore, GeneChipÂ® Chicken Genome Array was employed to identify the differentially expressed genes in embryonic hearts of Tibetan Chicken and two lowland chicken breeds in both hypoxic and normoxic incubating environments with a genome wide profile. Experiment Overall Design: To obtain general expression profiles of embryonic hearts in Tibetan Chicken(T), Dwarf Recessive White Chicken (DRW)and Shouguang Chicken (S)in hypoxia and normoxia, the fertilized full sib eggs of all the three chicken breeds were incubated under two different conditions. The heart was isolated from all the three chicken breeds under the two different conditions for RNA extraction and hybridization on Affymetrix microarrays.

2009-09-17 | E-GEOD-12675 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data