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Copy Number Variation across 12 tribes of African cichlid species

ABSTRACT: This study examines genomic copy-number variation among African cichlids spanning multiple tribes and radiations. We map CNVs and hotspots throughout the Oreochromis niloticus reference genome, categorize gene ontology enrichment within CNV regions, and compare results with sequence-based cichlid phylogenies.

ORGANISM(S): Neochromis omnicaeruleus Neolamprologus brichardi Tropheops sp. 'red cheek' Haplochromis chilotes Coptodon zillii Coptodon kottae Oreochromis alcalicus Sarotherodon lamprechti Cyprichromis leptosoma Maylandia zebra Cyphotilapia frontosa Diplotaxodon greenwoodi Tropheus moorii Ophthalmotilapia ventralis Oreochromis latilabris Copadichromis borleyi Hemichromis fasciatus Coptodon fusiforme Pseudocrenilabrus multicolor victoriae Oreochromis ndalalani Nyassachromis microcephalus Coptodon deckerti Xenotilapia spiloptera Pungu maclareni Astatoreochromis alluaudi Labeotropheus fuelleborni Konia eisentrauti Cyathopharynx furcifer Lepidiolamprologus elongatus Variabilichromis moorii Lobochilotes labiata Stomatepia mariae Haplochromis thereuterion Astatotilapia flaviijosephi Sarotherodon knauerae Eretmodus cyanostictus Haplochromis burtoni Julidochromis ornatus Astatotilapia calliptera Callochromis macrops Copadichromis virginalis Coptodon ejagham Boulengerochromis microlepis Oreochromis grahami Sarotherodon melanotheron Pallidochromis tokolosh Sarotherodon galilaeus Oreochromis niloticus Paralabidochromis sp. Rubricatochromis bimaculatus Pundamilia nyererei Astatotilapia bloyeti Benthodesmus elongatus Rhamphochromis longiceps

PROVIDER: GSE117914 | GEO | 2019/07/26

REPOSITORIES: GEO

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