Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide essential gene identification for SubAB toxin-induced cell death using CRISPR/CAS9 screening system

ABSTRACT: Isolation of genes whose knockout confer resistance to SubAB-Induced cell death

ORGANISM(S): Homo sapiens

PROVIDER: GSE125650 | GEO | 2019/04/26

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Genome-wide essential gene identification for Shiga toxin-induced cell death using CRISPR/CAS9 screening system with Vero cells

Project description:Isolation of genes in Vero cell whose knockout confer resistance to Stx-induced cell death

2021-05-06 | GSE169364 | GEO

Genome-wide essential gene identification for Shiga toxin-induced cell death using CRISPR/CAS9 screening system

Project description:Isolation of genes whose knockout conferring resistance to STx-Induced cell death

2018-12-20 | GSE116730 | GEO

Genome-wide essential gene identification for lysenin-induced cell death using CRISPR/CAS9 screening system

Project description:Isolation of genes whose knockout conferring resistance to lysenin-Induced cell death

2023-04-30 | GSE185404 | GEO

Genome-wide essential gene identification for SubAB toxin-induced cell death using CRISPR/CAS9 screening system

Project description:Genome-wide essential gene identification for SubAB toxin-induced cell death using CRISPR/CAS9 screening system

| PRJNA517089 | ENA

Genome-wide essential gene identification for Shiga toxin-induced cell death using CRISPR/CAS9 screening system

Project description:Genome-wide essential gene identification for Shiga toxin-induced cell death using CRISPR/CAS9 screening system

| PRJNA480005 | ENA

Genome-wide essential gene identification for Shiga toxin-induced cell death using CRISPR/CAS9 screening system with Vero cells

Project description:Genome-wide essential gene identification for Shiga toxin-induced cell death using CRISPR/CAS9 screening system with Vero cells

| PRJNA716329 | ENA

Genome-wide essential gene identification for lysenin-induced cell death using CRISPR/CAS9 screening system

Project description:Genome-wide essential gene identification for lysenin-induced cell death using CRISPR/CAS9 screening system

| PRJNA769044 | ENA

CRISPR/Cas9 screening using unique molecular identifiers.

Project description:Loss-of-function screening by CRISPR/Cas9 gene knockout with pooled, lentiviral guide libraries is a widely applicable method for systematic identification of genes contributing to diverse cellular phenotypes. Here, Random Sequence Labels (RSLs) are incorporated into the guide library, which act as unique molecular identifiers (UMIs) to allow massively parallel lineage tracing and lineage dropout screening. RSLs greatly improve the reproducibility of results by increasing both the precision and the accuracy of screens. They reduce the number of cells needed to reach a set statistical power, or allow a more robust screen using the same number of cells.

| S-EPMC5658704 | biostudies-literature

Genome engineering using the CRISPR-Cas9 system.

Project description:Targeted nucleases are powerful tools for mediating genome alteration with high precision. The RNA-guided Cas9 nuclease from the microbial clustered regularly interspaced short palindromic repeats (CRISPR) adaptive immune system can be used to facilitate efficient genome engineering in eukaryotic cells by simply specifying a 20-nt targeting sequence within its guide RNA. Here we describe a set of tools for Cas9-mediated genome editing via nonhomologous end joining (NHEJ) or homology-directed repair (HDR) in mammalian cells, as well as generation of modified cell lines for downstream functional studies. To minimize off-target cleavage, we further describe a double-nicking strategy using the Cas9 nickase mutant with paired guide RNAs. This protocol provides experimentally derived guidelines for the selection of target sites, evaluation of cleavage efficiency and analysis of off-target activity. Beginning with target design, gene modifications can be achieved within as little as 1-2 weeks, and modified clonal cell lines can be derived within 2-3 weeks.

| S-EPMC3969860 | biostudies-literature

Identification of genes essential for the cell death induced by OSW-1 using the Genome-wide CRISPR-Cas9 knockout (GeCKO) screening

Project description:The Golgi stress response is an important cytoprotective system that enhances Golgi function in response to cellular demand, while cells damaged by prolonged Golgi stress undergo cell death. OSW-1, a natural compound with anticancer activity, potently inhibits OSBP that transports cholesterol and phosphatidylinositol-4-phosphate (PI4P) at contact sites between the endoplasmic reticulum and the Golgi apparatus. Previously, we reported that OSW-1 induces the Golgi stress response, resulting in Golgi stress- induced transcription and cell death. However, the underlying molecular mechanism has been unknown. To reveal the mechanism of a novel pathway of the Golgi stress response regulating transcriptional induction and cell death (the PI4P pathway), we performed a genome-wide knockout screen and found that transcriptional induction as well as cell death induced by OSW-1 was repressed by the loss of regulators of PI4P synthesis, such as PITPNB and PI4KB. Our data indicate that OSW-1 induces Golgi stress-dependent transcriptional induction and cell death through dysregulation of the PI4P metabolism in the Golgi.

2024-02-16 | GSE255970 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data