Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bisulfite sequencing of medaka PGCs methylomes

ABSTRACT: Medaka PGCs methylomes were sequenced using whole genome bisulfite sequencing (WGBS)

ORGANISM(S): Oryzias latipes

PROVIDER: GSE130002 | GEO | 2019/12/25

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Bisulfite sequencing of medaka sperm methylomes

Project description:Medaka sperm methylomes were sequenced using whole genome bisulfite sequencing (WGBS)

2019-04-23 | GSE128797 | GEO

Bisulfite sequencing of medaka egg methylomes

Project description:Medaka egg methylomes were sequenced using whole genome bisulfite sequencing (WGBS)

2024-11-01 | GSE160094 | GEO

Bisulfite sequencing of medaka PGCs methylomes

Project description:Bisulfite sequencing of medaka PGCs methylomes

| PRJNA533476 | ENA

Bisulfite sequencing of medaka egg methylomes

Project description:Bisulfite sequencing of medaka egg methylomes

| PRJNA671826 | ENA

Bisulfite sequencing of medaka sperm methylomes

Project description:Bisulfite sequencing of medaka sperm methylomes

| PRJNA528903 | ENA

Bisulfite sequencing of medaka

Project description:Bisulfite sequencing of medaka

| PRJNA671869 | ENA

Whole Genome Bisulfite Sequencing (WGBS) or zebrafish, medaka, and zebrafish-medaka hybrid embryos

Project description:During development, the inherited DNA methylation patterns from the parental gametes needs to be remodeled into a state compatible with embryonic pluripotency. In Zebrafish, this remodeling is achieved by the maternal methylome becoming hypomethylated to match the paternal methylome. However, how this is achieved in medaka (another teleost fish) is currently not known. Moreover, how DNA methylation remodeling is impacted in hybrid organisms, and the effects this may have on their development, is also not known. Here we address these questions by generation whole genome bisulfite sequencing data for zebrafish, medaka and zebrafish medaka embryos.

2023-08-25 | E-MTAB-12535 | biostudies-arrayexpress

Whole Genome Bisulfite Sequencing (WGBS) or zebrafish, medaka, and zebrafish-medaka hybrid embryos

Project description:Whole Genome Bisulfite Sequencing (WGBS) or zebrafish, medaka, and zebrafish-medaka hybrid embryos

| PRJEB59047 | ENA

The DNA Methylomes of a Newborn and a Centenarian

Project description:Examination of two DNA methylomes at the most extreme points of their lives to see differences that might contribute to explain the aged phenotype We have performed Whole Genome Bisulfite Sequencing (WGBS) and methylation array technology of newborn and a centenarian samples to address the Epigenetic drifts in Human aging, which might be an alternative pathway to explain the age-associated alterations. In addition, we used SNP array platforms to exclude an influence of copy number changes with age and SNPs on the identification of differentially methylated regions. This Series represents the methylation array data. The WGBS data are available in GSE31263.

2012-07-10 | E-GEOD-31438 | biostudies-arrayexpress

Effects of Potassium Perchlorate on Developing Medaka Primordial Germ Cells

Project description:The present study examined the effects of 0, 10, 100, and 1000 μg/L potassium perchlorate exposure on PGCs of medaka embryos and the expression pattern of genes that maintain PGCs integrity and epigenetic processes.

2024-06-21 | GSE178587 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data