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RNA secondary structome of SARS-CoV-2 and other 6 virus structures in the UTR regions

ABSTRACT: we resolved the RNA secondary structure of SARS-CoV-2 infected in Huh7.5.1 cells, in vitro structure of SARS-CoV-2 RNA purified from infected cells and refolded in test tube and viral RNA fragments of 7 coronaviruses including SARS-CoV-2, SARS-CoV and MERS-CoV based on in vivo click selective 2'-hydroxyl acylation and profiling experiment (icSHAPE). We built RNA structural model of SARS-CoV-2, found some functional structural elements, analysed the RNA structure conservation among different coronavirus. Also, we predicted RBP binding sites and identified some potential drug for CoVID-19 therapy.

ORGANISM(S): Middle East respiratory syndrome-related coronavirus Severe acute respiratory syndrome coronavirus 2

PROVIDER: GSE153984 | GEO | 2020/11/12

REPOSITORIES: GEO

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