Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of differentiated primary normal human bronchoepithelial (NHBE) cells overexpressing ZNF676.

ABSTRACT: RNA-seq of primary normal human bronchoepithelial (NHBE) cells differentiated to have cilia. They express either ZNF676 (experiment), either LacZ (control).

ORGANISM(S): Homo sapiens

PROVIDER: GSE163543 | GEO | 2022/01/28

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

RNA-seq of differentiated primary normal human bronchoepithelial (NHBE) cells overexpressing ZNF676.

Project description:RNA-seq of differentiated primary normal human bronchoepithelial (NHBE) cells overexpressing ZNF676.

| PRJNA686654 | ENA

ZNF676 ChIP-seq in HEK293T and H1 cells

Project description:Genome-wide binding profile of the primate-specific KRAB zinc finger protein ZNF676 in cell lines overexpressing the protein.

2022-01-28 | GSE163541 | GEO

ZNF676 and ZNF728 ChIP-exo in HEK293T cells

Project description:Genome-wide binding profile of the primate-specific KRAB zinc finger proteins ZNF676 and ZNF728 in cell lines overexpressing the proteins.

2022-01-28 | GSE163540 | GEO

RNA-seq of ZNF676 KD Win1 naive embryonic stem cells and control cells

Project description:RNA-seq analysis of Win1 naive embryonic stem cells carrying an shRNA against ZNF676 and a control shRNA

2022-01-28 | GSE163544 | GEO

Expression data comparing Normal Human Bronchial Epithelial Cells (NHBE) cells in states of senescence, proliferation and quiescence

Project description:EGFR inhibitor Erlotinib treatment can induce NHBE into profound cell cycle arrest that include senescence and quiescence. Because senescent cells feature high senescence assocaited-beta-galactosidase(SA-β-gal) activty, which has been used as marker for FACS based collection of senescent and quiescent cells, respectively.

2018-07-27 | GSE100014 | GEO

Time course of NHBE cells exposed to whole cigarette smoke

2008-03-04 | GSE10700 | GEO

Time course of NHBE cells exposed to whole cigarette smoke (full flavor)

Project description:Gene expression patterns were assessed in normal human bronchial epithelial (NHBE) cells exposed to cigarette smoke (CS) from a typical "full flavor" American brand of cigarettes in order to develop a better understanding of the genomic impact of tobacco exposure, which can ultimately define biomarkers that discriminate tobacco-related effects and outcomes in a clinical setting. NHBE cells were treated with CS for 15 minutes and alterations to the transcriptome assessed at 1,2,4 and 24 hours post-CS-exposure using high-density oligonucleotide microarrays. Keywords: Time course

2008-03-05 | GSE10718 | GEO

Whole-genome tiling array analysis in normal human bronchial/tracheal epithelial cells (NHBE)

Project description:Identify transcriptionally-active regions (TARs) greater than 400 nt long across the entire human genome. A total of 578 were identified in NHBE cells. We then focused on those TARs originating from non-coding sequence and that displayed a moderate to high degree of sequence conservation. A subset of 15 non-coding transcripts were then further examined to determine if they are altered in cancer (deregulated expression in breast and ovarian cancer and sequenced for mutations in a panel of cancer samples). Only transcriptionally-active regions originating from non-coding sequence, expressing at the 99.5th percentile, and longer than 400 nt were examined so far in our studies. Keywords: whole-genome mapping, transcriptionally-active regions, tiling arrays, non-coding transcripts, bronchial/tracheal epithelial cells

2007-11-22 | GSE9655 | GEO

Transcription profiling of human NHBE cells exposed TO NORMAL human bronchial epithelial whole cigarette smoke FROM light AND standard brands

Project description:Gene expression patterns were assessed in normal human bronchial epithelial (NHBE) cells exposed to cigarette smoke from a reference cigarette (2R4F, University of Kentucky) and a typical American brand of "light" cigarettes ("Lights") in order to develop a better understanding of the genomic impact of tobacco exposure, which can ultimately define biomarkers that discriminate tobacco-related effects and outcomes in a clinical setting. NHBE cells were treated with whole cigarette smoke for 15 minutes and alterations to the transcriptome assessed at 2, 4, 8 and 24 hours post-exposure using high-density oligonucleotide microarrays. Experiment Overall Design: 4 replicate Petri dishes of cells were exposed in a custom-built smoke exposure chamber. Cigarettes were smoked as per FTC protocols, and the smoke diluted such that the cells were at least 50% viable as compared to mock (air)-exposed controls after 24h. RNA from each replicate dish was analyzed using a separate array. Four replicates of an incubator (untreated with either smoke or air) are included also.

2008-04-06 | E-GEOD-10700 | biostudies-arrayexpress

ZNF676 and ZNF728 ChIP-exo in HEK293T cells

Project description:ZNF676 and ZNF728 ChIP-exo in HEK293T cells

| PRJNA686651 | ENA