Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, RNA-seq]

ABSTRACT: MADS27 was differetially expressed during nitrate stress in roots of rice plant. In order to further verify the effect of MADS27 overexpression in rice root development, RNA-seq analysis was performed on plants overexpressing MADS27.

ORGANISM(S): Oryza sativa

PROVIDER: GSE166666 | GEO | 2022/04/01

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Understanding the nitrate responsive regulatory modules in Rice [RNA-seq]

Project description:To identify the differetially expressed genes under nitrate stress, RNA-seq was performed using total RNA extracted from root and seedling tissues from plants were grown in both low (0 mM) and high (100 mM) nitrate conditions. The analysis was performed in duplicates and the reads were mapped to rice (IRGSP-1) genome.

2022-04-01 | GSE166667 | GEO

Understanding the nitrate responsive regulatory modules in Rice [ncRNA-seq]

Project description:To identify the differetially expressed sRNAs under nitrate stress, sRNA-seq was performed using total RNA extracted from root and seedling tissues from plants were grown in both low (0 mM) and high (100 mM) nitrate conditions. The analysis was performed in duplicates and the reads were processed and analysed using UEA sRNA workbench.

2022-04-01 | GSE166668 | GEO

Understanding the nitrate responsive regulatory modules in Rice

Project description:Understanding the nitrate responsive regulatory modules in Rice

| PRJNA701560 | ENA

Understanding the nitrate responsive regulatory modules in Rice [RNA-seq]

Project description:Understanding the nitrate responsive regulatory modules in Rice [RNA-seq]

| PRJNA701563 | ENA

Understanding the nitrate responsive regulatory modules in Rice [ncRNA-seq]

Project description:Understanding the nitrate responsive regulatory modules in Rice [ncRNA-seq]

| PRJNA701564 | ENA

Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, ChIP-seq]

Project description:To identify genome-wide binding sites of MADS27, we performed ChIP-seq experiment from 3xMyc-OsMADS27OE rice seedlings.

2022-04-01 | GSE166665 | GEO

Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, RNA-seq]

Project description:Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, RNA-seq]

| PRJNA701562 | ENA

Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, ChIP-seq]

Project description:Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, ChIP-seq]

| PRJNA701561 | ENA

Understanding the nitrate responsive regulatory modules in Rice

Project description:This SuperSeries is composed of the SubSeries listed below.

2022-04-01 | GSE166669 | GEO

Nitrate or urea responsive microarray in a pair of contrsting rice genotypes

Project description:To find out the genotype specific differentially expressed genes in response to N source Two contrasting Indica rice genotypes namely, Nidhi and Panvel 1 were used. Arnon Hoagland medium with either nitrate or urea were used as fertilizer sources. Two N doses, normal (15 mM of N) was used as control while low (1.5mM of N) was used as test.

2022-04-28 | GSE140257 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data