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Understanding the nitrate responsive regulatory modules in Rice [ncRNA-seq]

ABSTRACT: Understanding the nitrate responsive regulatory modules in Rice [ncRNA-seq]

PROVIDER: PRJNA701564 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR13696502.fastq.gz	Fastqsanger.gz
	SRR13696503.fastq.gz	Fastqsanger.gz
	SRR13696504.fastq.gz	Fastqsanger.gz
	SRR13696505.fastq.gz	Fastqsanger.gz
	SRR13696506.fastq.gz	Fastqsanger.gz

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Understanding the nitrate responsive regulatory modules in Rice

Project description:Understanding the nitrate responsive regulatory modules in Rice

| PRJNA701560 | ENA

Understanding the nitrate responsive regulatory modules in Rice [ncRNA-seq]

Project description:To identify the differetially expressed sRNAs under nitrate stress, sRNA-seq was performed using total RNA extracted from root and seedling tissues from plants were grown in both low (0 mM) and high (100 mM) nitrate conditions. The analysis was performed in duplicates and the reads were processed and analysed using UEA sRNA workbench.

2022-04-01 | GSE166668 | GEO

Understanding the nitrate responsive regulatory modules in Rice [RNA-seq]

Project description:Understanding the nitrate responsive regulatory modules in Rice [RNA-seq]

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Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, ChIP-seq]

Project description:Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, ChIP-seq]

| PRJNA701561 | ENA

Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, RNA-seq]

Project description:Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, RNA-seq]

| PRJNA701562 | ENA

Understanding the nitrate responsive regulatory modules in Rice [RNA-seq]

Project description:To identify the differetially expressed genes under nitrate stress, RNA-seq was performed using total RNA extracted from root and seedling tissues from plants were grown in both low (0 mM) and high (100 mM) nitrate conditions. The analysis was performed in duplicates and the reads were mapped to rice (IRGSP-1) genome.

2022-04-01 | GSE166667 | GEO

Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, RNA-seq]

Project description:MADS27 was differetially expressed during nitrate stress in roots of rice plant. In order to further verify the effect of MADS27 overexpression in rice root development, RNA-seq analysis was performed on plants overexpressing MADS27.

2022-04-01 | GSE166666 | GEO

Understanding the nitrate responsive regulatory modules in Rice

Project description:This SuperSeries is composed of the SubSeries listed below.

2022-04-01 | GSE166669 | GEO

Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, ChIP-seq]

Project description:To identify genome-wide binding sites of MADS27, we performed ChIP-seq experiment from 3xMyc-OsMADS27OE rice seedlings.

2022-04-01 | GSE166665 | GEO

Analysis of the nitrate-responsive transcriptome of the Arabidopsis root

Project description:Nitrate and other nitrogen metabolites can act as signals that regulate global gene expression in plants. Adaptive changes in plant morphology and physiology triggered by changes in nitrate availability are partly explained by these changes in gene expression. Despite several genome-wide efforts to identify nitrate-regulated genes, no comprehensive study of the Arabidopsis root transcriptome under contrasting nitrate conditions has been carried out. In this work, we employed the Illumina high throughput sequencing technology to perform an integrated analysis of the poly-A+ enriched and the small RNA fractions of the Arabidopsis thaliana root transcriptome in response to nitrate treatments. Our sequencing strategy identified new nitrate-regulated genes including 40 genes not represented in the ATH1 Affymetrix GeneChip, a novel nitrate-responsive antisense transcript and a new nitrate responsive miRNA/TARGET module consisting of a novel microRNA, miR5640 and its target, AtPPC3. This nitrate-responsive miRNA/target module might be involved in controlling carbon flux to assimilate nitrate into amino acids, suggesting that microRNAs can have both developmental and metabolic functions in the nitrate response of Arabidopsis roots.

2013-07-01 | GSE44062 | GEO

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