Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bulk and single-cell RNA-seq reveal the role of dmrtb1 in a sequentially hermaphroditic fish, Mastacembelus armatus

ABSTRACT: Sequential hermaphroditism, whereby the sex of one individual changes during its development, has been described in many fish species. Yet, the genetic regulation of this dynamic process of sexual differentiation is not well understood. Here, we report the characterization of sequential hermaphroditism in an aquacultural fish, the zig-zag eel (Mastacembelus armatus), based on 4 years of artificial breeding. All M. armatus individuals initially developed as females, with approximately half of them then becoming males after going through an intersex phase.

ORGANISM(S): Mastacembelus armatus

PROVIDER: GSE175406 | GEO | 2021/05/25

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Project description:Mastacembelus armatus (zig-zag eel)

| PRJEB31554 | ENA

fMasArm1

Project description:Mastacembelus armatus (zig-zag eel) genome assembly, fMasArm1

| PRJEB25769 | ENA

fMasArm1.2 alternate haplotype

Project description:Mastacembelus armatus (zig-zag eel) genome assembly, fMasArm1.2, alternate haplotype

| PRJEB31553 | ENA

Escalation in the host-pathogen arms race: a host resistance response corresponds to a heightened bacterial virulence response

Project description:The zig-zag model of host-pathogen interaction describes the relative strength of defense response across a spectrum of pathogen-induced plant phenotypes. A stronger defense response results in increased resistance. Here, we investigate the strength of pathogen virulence during disease and place these findings in the context of the zig-zag model. Xanthomonas vasicola pv. holcicola (Xvh) causes sorghum bacterial leaf streak. Despite being widespread, this disease has not been described in detail at the molecular level. We divided diverse sorghum genotypes into three groups based on disease symptoms: water-soaked lesions, red lesions, and resistance. Bacterial growth assays confirmed that these three phenotypes represent a range of resistance and susceptibility. To simultaneously reveal defense and virulence responses across the spectrum of disease phenotypes, we performed dual RNA-seq on Xvh-infected sorghum. Consistent with the zig-zag model, the expression of plant defense-related genes was strongest in the resistance interaction. Surprisingly, bacterial virulence genes related to the type III secretion system (T3SS) and type III effectors (T3Es) were also most highly expressed in the resistance interaction. This expression pattern was observed at multiple time points within the sorghum-Xvh pathosystem. Further, a similar expression pattern was observed in Arabidopsis infected with Pseudomonas syringae for effector-triggered immunity via AvrRps4 but not AvrRpt2. Specific metabolites were able to repress the Xvh virulence response in vitro and in planta suggesting a possible signaling mechanism. Taken together, these findings reveal multiple permutations of the continually evolving host-pathogen arms race from the perspective of host defense and pathogen virulence responses.

2019-12-14 | GSE142035 | GEO

Getting inside of the molecular pathways associated with intersex in the rainbow darter (Etheostoma caeruleum)

Project description:Rainbow darter (Etheostoma caeruleum) are a small benthic fish found in North America. This species is sensitive to sewage effluent in the environment, showing the presence of intersex in up to 80% of males in near-field areas in the Grand River, ON. To learn more about the molecular events associated with intersex, we developed a customized oligonucleotide microarray (4x180K) with next generation sequencing (454 Roche) to characterize molecular responses in the gonad. Transcriptomics was performed on both males and females from both a reference site and a polluted site. Males with and without intersex from the polluted site were compared to the control males. Rainbow darter were sampled from from the Grand River in May 2011. Fish were selected according to the location, gonad maturity, and intersex index. Reference fish were taken from the upstream to the urban area; exposed fish were taken from downstream of from Kitchener MWWE treatment plant.

2014-05-22 | E-GEOD-57394 | biostudies-arrayexpress

A transcriptomic study reveals that fish vibriosis due to the zoonotic pathogen Vibrio vulnificus is an acute inflammatory disease.

Project description:Vibrio vulnificus is a marine zoonotic pathogen associated with fish farms that is considered a biomarker of climate change. Zoonotic strains trigger a rapid death of their susceptible hosts (fish or humans) by septicemia that has been linked to a cytokine storm in mice. A toxin called RtxA1 produced by the bacteria might play an important role in bacterial invasion and subsequent death by septic shock since animals infected with a mutant deficient in rtxA1 suffer from septicemia but do not die. The aim of this study was to globally analyze the early eel immune response in blood against V. vulnificus, as well as the role of the RtxA1 toxin on this interaction.

2022-02-18 | GSE196944 | GEO

Transcriptome sequencing analysis of swamp eel

Project description:The swamp eel or rice field eel (Monopterus albus) taxonomically belongs to the family Synbranchidae of the order Synbranchiformes (Neoteleostei, Teleostei, Vertebrata). It is not only an economically important freshwater fish in aquacultural production, but also an increasingly known model species for biological studies. Understanding molecular mechanisms underlying sex change is a major area of interest. The swamp eel thus offers a powerful system for studying sexual development and adaptive evolution in vertebrates.The whole genome sequencing provides valuable resources for sex control in fish production, species protection through manipulating sex reversal genes, and potentially enabling effective population control and promoting reproduction health in human.

2016-01-01 | GSE43649 | GEO

Pritchard2014 - plant-microbe interaction

Project description:Pritchard2014 - plant-microbe interaction This model is an abstraction of a generic interaction between microbes, and a plant host. The reactions are generally intended to be representative of processes, not specific molecular mechanisms (except where indicated, eg. for activation of receptors). The model is intended to be of a similar level of abstraction as the Zig-Zag model proposed in Jones and Dangl (2006) [PMID: 17108957 ], but to represent a dynamic system. Jones and Dangl (2006) model is used here to illustrate the advantages of dynamic representations of systems over expository models such as the Zig-Zag model. This model is described in the article: The zigzag model of plant-microbe interactions: is it time to move on? Pritchard L, Birch PR. Mol. Plant Pathol. 2014 Dec; 15(9): 865-870 Abstract: This model is hosted on BioModels Database and identified by: BIOMD0000000563. To cite BioModels Database, please use: BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

2024-09-02 | BIOMD0000000563 | BioModels

Transcriptome sequencing analysis of swamp eel

2016-07-03 | E-GEOD-43649 | biostudies-arrayexpress

Getting inside of the molecular pathways associated with intersex in the rainbow darter (Etheostoma caeruleum)

2014-05-22 | GSE57394 | GEO