Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Expression data from human iPS cells and fibroblasts

ABSTRACT: DNA methylation is often inversely correlated with gene expression. We used expression microarrays to determine the relationship between DNA methylation and gene expression in 6 iPS cell lines and the fibroblasts from which they were derived.

ORGANISM(S): Homo sapiens

PROVIDER: GSE18226 | GEO | 2009/11/01

SECONDARY ACCESSION(S): PRJNA123497

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

DNA methylation data from human iPS cells and fibroblasts

2009-11-01 | GSE18227 | GEO

Expression data from human iPS cells and fibroblasts

Project description:DNA methylation is often inversely correlated with gene expression. We used expression microarrays to determine the relationship between DNA methylation and gene expression in 6 iPS cell lines and the fibroblasts from which they were derived. We isolated RNA from iPS cells and fibroblasts for which we have genome-wide DNA methylation data and hybridized to Affymetrix gene expression microarrays.

2009-10-31 | E-GEOD-18226 | biostudies-arrayexpress

DNA methylation data from human iPS cells and fibroblasts

Project description:DNA methylation is often inversely correlated with gene expression. We used custom Nimblegen microarrays to determine the relationship between DNA methylation and gene expression in 6 iPS cell lines and the fibroblasts from which they were derived. We isolated genomic DNA from iPS cells and fibroblasts and hybridized to custom-designed Nimblegen microarrays (CHARM arrays).

2009-10-31 | E-GEOD-18227 | biostudies-arrayexpress

Human iPS cells and fibroblasts

Project description:This SuperSeries is composed of the following subset Series: GSE18226: Expression data from human iPS cells and fibroblasts GSE18227: DNA methylation data from human iPS cells and fibroblasts Refer to individual Series

2009-10-31 | E-GEOD-18111 | biostudies-arrayexpress

LEOPARD Syndrome iPS, BJ iPS and Fibroblasts

Project description:Expression data from LEOPARD Syndrome-iPS clones, BJ-iPS cells and parental Fibroblasts

2010-06-10 | GSE20473 | GEO

DNA methylation data from a separate set of human iPS cells and fibroblasts, and ES cells

Project description:We used custom Nimblegen microarrays to determine the DNA methylation profiles of iPS cells, ES cells, and fibroblasts.

2010-10-20 | GSE24820 | GEO

DNA methylation data from a separate set of human iPS cells and fibroblasts, and ES cells

Project description:We used custom Nimblegen microarrays to determine the DNA methylation profiles of iPS cells, ES cells, and fibroblasts. We isolated genomic DNA from iPS cells, ES cells, and fibroblasts and hybridized to custom-designed Nimblegen microarrays (CHARM arrays).

2010-10-20 | E-GEOD-24820 | biostudies-arrayexpress

LEOPARD Syndrome iPS, BJ iPS and Fibroblasts

Project description:Expression data from LEOPARD Syndrome-iPS clones, BJ-iPS cells and parental Fibroblasts 9 samples in total are analyzed. Among 22011 genes in expression data, there are 3657 genes with at least 2 fold expression change between the average of the three fibroblast lines versus all of the iPS lines/HES samples. A heatmap can be generated for the expression levels for the 3657 genes and 9 samples.

2010-06-24 | E-GEOD-20473 | biostudies-arrayexpress

Gene expression profiles of murine fibroblasts and iPS

Project description:We reprogrammed adult murine fibroblasts obtained from p14f/f (wt version of conditional loxP-flanked p14 knockout (KO); C57/Bl6) by transduction of a lentiviral vector (pRRL.PPT.SF.hOKSMco.idTom.PRE) overexpressing the four Yamanaka factors (c-Myc, Klf-4, Oct-4, Sox-2). After successful reprogramming and establishment of stable iPS clones we performed gene expression profiling of three different murine iPS clones (#2, #2EX, #3) and their parental fibroblasts.

2018-03-01 | GSE97152 | GEO

Reprogramming of fibroblasts from Fragile-X patients to induced pluripotent stem cells (iPS) with defined factors

Project description:Human iPS cells derived from normal and Fragile-X fibroblasts in order to assess the capability of Fragile-X iPS cells to be used as a model for different aspects of Fragile-X syndrome. Microarry analysis used to compare global gene expression between human ES cells, the normal and the mutant iPS cells and the original fibroblasts, to demonstrate that the overall reprogramming process succeeded, and that the FX-iPS cells are fully reprogrammed cells.

2010-05-10 | GSE21348 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data