Transcriptomics

Dataset Information

0

Tumor immune profiling of gingivo-buccal oral cancer patients reveals two groups with significant differences in prognosis and immune contextures


ABSTRACT: Interactions between cancer and immune cells determine the formation and progression of a tumor. Variability of immune contextures in tumor and margins among patients with oral squamous cell carcinoma of the gingivobuccal region (OSCC-GB) – the most prevalent subtype of oral cancer in India and southeast Asia – and the relationship of these contextures with prognosis are largely unknown. Treatment naïve, HPV negative, OSCC-GB patients (n=46) were recruited, treated, followed-up for two years and recurrence/death noted. Immune contextures of tumor and negative margins were studied using RNA-sequencing and immunohistochemistry (n=43; margin tissues were unavailable from three patients). Expressions of 544 immune related genes (IRGs) revealed a subgroup of patients (28%) with poor prognosis (high recurrence and death). The compositions of immune cell-types of normal and negative margin tissues were similar among patients irrespective of prognoses; differences were observed only in tumor.

ORGANISM(S): Homo sapiens

PROVIDER: GSE213862 | GEO | 2023/09/20

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2011-08-02 | E-GEOD-31056 | biostudies-arrayexpress
2023-12-31 | GSE219053 | GEO
2011-08-03 | GSE31056 | GEO
2023-10-26 | GSE215403 | GEO
2016-03-23 | E-GEOD-68717 | biostudies-arrayexpress
2023-07-20 | PXD041856 | Pride
2013-03-07 | E-GEOD-41613 | biostudies-arrayexpress
2018-01-17 | E-MTAB-5933 | biostudies-arrayexpress
2018-02-09 | E-MTAB-6470 | biostudies-arrayexpress
2016-03-23 | GSE68717 | GEO