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Effect of lncMGC on gene expression of kidney mesangial cells under SD or TGF-ß treatment

ABSTRACT: This SuperSeries is composed of the SubSeries listed below.

ORGANISM(S): Mus musculus

PROVIDER: GSE229689 | GEO | 2023/06/21

REPOSITORIES: GEO

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Effect of lncMGC on gene expression of kidney mesangial cells under SD or TGF-ß treatment [ChIP-seq]

Project description:To investigate the function of long noncoding RNA lncMGC in WT and lncMGC KO mouse kidney mesangial cells treated with TGF-ß. Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for histone modication mark H3K27ac on 4 types of kidney messangial cell samples: isolated from wild type (WT) or lncMGC knockout (lncMGC_KO) mouses, each treated with either SD or TGF-ß, namely WT_SD, WT_TGF, KO_SD and KO_TGF.

2023-06-21 | GSE229687 | GEO

Effect of lncMGC on gene expression of kidney mesangial cells under SD or TGF-ß treatment [ATAC-seq]

Project description:To investigate the function of long noncoding RNA lncMGC in WT and lncMGC KO mouse kidney mesangial cells treated with TGF-ß. Assay for Transposase-Accessible Chromatin (ATAC) sequencing on 4 types of kidney messangial cell samples: isolated from wild type (WT) or lncMGC knockout (lncMGC_KO) mouses, each treated with either SD or TGF-ß, namely WT_SD, WT_TGF, KO_SD and KO_TGF.

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Effect of lncMGC on gene expression of kidney mesangial cells under SD or TGF-ß treatment [RNA-seq]

Project description:To investigate the function of long noncoding RNA lncMGC in WT and lncMGC KO mouse kidney mesangial cells treated with TGF-ß. We then performed gene expression profiling analysis using data obtained from RNA-seq of 4 types of kidney messangial cell samples: wild type (WT) or lncMGC knockout (lncMGC_KO) mouse, each treated with either SD or TGF-ß, namely WT_SD, WT_TGF, KO_SD and KO_TGF.

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Effect of lncMGC on gene expression of kidney mesangial cells under SD or TGF-ß treatment

Project description:Effect of lncMGC on gene expression of kidney mesangial cells under SD or TGF-ß treatment

| PRJNA955290 | ENA

Effect of lncMGC on gene expression of kidney mesangial cells under SD or TGF-ß treatment [ATAC-seq]

Project description:Effect of lncMGC on gene expression of kidney mesangial cells under SD or TGF-ß treatment [ATAC-seq]

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Effect of lncMGC on gene expression of kidney mesangial cells under SD or TGF-ß treatment [ChIP-seq]

Project description:Effect of lncMGC on gene expression of kidney mesangial cells under SD or TGF-ß treatment [ChIP-seq]

| PRJNA955293 | ENA

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Project description:Effect of lncMGC on gene expression of kidney mesangial cells under SD or TGF-ß treatment [RNA-seq]

| PRJNA955292 | ENA

Gene expression and methylation profile for male SD Rats upon fructose and DHA treatment

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