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ATAC-seq of frozen H1 Human Embryonic Stem Cells (hESC)

ABSTRACT: We performed Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) to profile genome-wide chromatin accessibility in the human H1 embryonic stem cell (ESC) line. We used this data to train a deep learning model called ChromBPNet which can accurately predict base-resolution accessibility profiles as a function of DNA sequence, while accounting for and correcting biases due the sequence preferences of the Tn5 transposase used in ATAC-seq. We interpreted the models to identify globally predictive transcription factor (TF) motifs, individual predictive motif instances in all accessible regions and Tn5-bias corrected canonical footprints of TFs at these predictive motifs.

ORGANISM(S): Homo sapiens

PROVIDER: GSE267154 | GEO | 2024/05/12

REPOSITORIES: GEO

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