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ATAC-Seq of Primary cord blood (CB) derived hematopoietic cells spanning B-Cell Differentiation

ABSTRACT: Library preparation for ATAC-Seq was performed on 1000-5000 cells with Nextera DNA Sample Preparation kit (Illumina), according to previously reported protocol55. 4 ATAC-seq libraries were sequenced per lane in HiSeq 2500 System (Illumina) to generate paired-end 50-bp reads. Reads were mapped to hg38 using BWA (0.7.15) using default parameters. Duplicate reads, reads mapped to mitochondria, an ENCODE blacklisted region or an unspecified contig were removed (Encode Project Consortium, 2012). MACS (2.2.5) was used to call peaks in mapped reads.

ORGANISM(S): Homo sapiens

PROVIDER: GSE285437 | GEO | 2025/03/10

REPOSITORIES: GEO

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