Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Global Changes in Gene Expression in Mesorhizobium loti MAFF303099 upon an acidic shock

ABSTRACT: Expression profiling of a total of 7281 transcripts was compared between control and acidic shock conditions.

ORGANISM(S): Mesorhizobium japonicum MAFF 303099

PROVIDER: GSE43527 | GEO | 2015/12/21

SECONDARY ACCESSION(S): PRJNA186726

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Global Changes in Gene Expression in Mesorhizobium loti MAFF303099 upon an heat shock

Project description:Expression profiling of a total of 7281 transcripts was compared between control and heat shock conditions.

2015-12-21 | GSE43529 | GEO

Global Changes in Gene Expression in Mesorhizobium loti MAFF303099 upon an salt shock

Project description:Expression profiling of a total of 7281 transcripts was compared between control and salt shock conditions.

2016-12-31 | GSE43530 | GEO

Transcriptomic analysis of Mtb Erdman, MtbΔvirS and MtbΔvirSComplement upon acidic stress of pH4.5

Project description:Since VirS was shown to be upregulated in acidic conditions and MtbΔvirS displayed defect in growth at pH4.5, we performed microarray at pH 6.6 and pH 4.5 to study the role of VirS in regulating gene expression at acidic pH.

2019-05-23 | GSE118508 | GEO

Mesorhizobium japonicum MAFF 303099

Project description:Global Changes in Gene Expression in Mesorhizobium loti MAFF303099 upon an acidic shock

| PRJNA186726 | ENA

Transcriptome-wide changes in HeLa cell line investigated in response to Heat-shock stress

Project description:The repertoire of transcripts that are differentially regulated in response to Heat-shock were studied using Illumina WG-6 v2.0 BeadChip.

2011-11-09 | GSE26776 | GEO

Hog1 controls global reallocation of RNA Pol II upon osmotic shock

Project description:When challenged with osmotic shock, S. cerevisiae induces hundreds of genes, despite a global reduction in transcriptional capacity. The mechanisms that regulate this rapid reallocation of transcriptional resources are not known. Here we show that redistribution of RNA Pol II upon stress requires the stress-responsive MAP kinase Hog1. We find that Hog1 and RNA Pol II co-localize to open reading frames that bypass global transcriptional repression, and that these targets are specified by two osmotic stress-responsive transcription factors. The combination of reduced global transcription with a gene-specific override mechanism allows cells to rapidly switch their transcriptional program in response to stress.

2012-07-15 | GSE38208 | GEO

Transcriptome-wide changes in HeLa cell line investigated in response to Heat-shock stress

Project description:The repertoire of transcripts that are differentially regulated in response to Heat-shock were studied using Illumina WG-6 v2.0 BeadChip. Study was undertaken with 3 biological replicates for each condition of Heat-Shock Treated and Untreated condition.

2011-11-09 | E-GEOD-26776 | biostudies-arrayexpress

Identification of acidic extracellular pH-modulated genes

Project description:To investigate the genes that are modulated by acidic extracellular pH, we treated the mouse B16-BL6 cells with acidic medium and then analyzed them comprehensively by cDNA microarray.

2024-09-09 | GSE276124 | GEO

Gene expression in INA6 multiple myeloma cells in an acidic condition

Project description:We found the epigenetic regulation of gene expression in MM cells in acidic conditions. We further looked into gene expression in MM cells in acidic conditions using a cDNA microarray. INA6 cells were cultured for 12 hours, at pH7.4 or pH6.8 in the absence or presence of valproiate at 100 ug/mL. The total RNA was isolated using RNeasy Mini kit.

2013-11-22 | E-GEOD-52611 | biostudies-arrayexpress

Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock [S2]

Project description:Heat shock (HS) causes dramatic and rapid changes in transcription of thousands of genes in metazoans. We have used insitu Hi-C in Drosophila S2 and human K562 cells to determine the effects of HS upon chromatin conformation. Our study shows that topologically associated domains (TADs), compartments and distal regulatory interactions remain unchanged upon HS.

2019-06-07 | GSE130776 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data