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Bf_vs_f-Comparative Arabidopsis Transcriptome -Sequencing

ABSTRACT: cat-seq - bf_vs_f - A comparative assessment of the Arabidopsis sequencing approach High-throughput sequencing cDNA GAII or HiSeq2000 sequenceur (technology Solexa) and data on CATMA array hybridation (version 6). These different characteristics will be studied through the analysis of control samples but also samples from mutants in genes coding for cytosolic or nuclear PPR proteins - The two selected samples are the flower buds and leaves of Arabidopsis. Two organs known as the transcriptome is very different. This experience will serve as reference

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE45345 | GEO | 2013/09/10

SECONDARY ACCESSION(S): PRJNA193522

REPOSITORIES: GEO

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bf_vs_f-Comparative Arabidopsis Transcriptome -Sequencing

Project description:cat-seq - bf_vs_f - A comparative assessment of the Arabidopsis sequencing approach High-throughput sequencing cDNA GAII or HiSeq2000 sequenceur (technology Solexa) and data on CATMA array hybridation (version 6). These different characteristics will be studied through the analysis of control samples but also samples from mutants in genes coding for cytosolic or nuclear PPR proteins - The two selected samples are the flower buds and leaves of Arabidopsis. Two organs known as the transcriptome is very different. This experience will serve as reference 2 dye-swap - organ comparison

2013-09-10 | E-GEOD-45345 | biostudies-arrayexpress

crr4_dyw1_col0-Comparative Arabidopsis Transcriptome -Sequencing

Project description:cat-seq - crr4_dyw1_col0 - A comparative assessment of the Arabidopsis sequencing approach High-throughput sequencing cDNA GAII or HiSeq2000 sequenceur (technology Solexa) and data on CATMA array hybridation (version 6). These different characteristics will be studied through the analysis of control samples but also samples from mutants in genes coding for cytosolic or nuclear PPR proteins - CRR4 and DYW1 are two PPR mutants. They have the same post-transcriptonnel molecular defect and their phenotype is very close. We will try to determine here if their transcriptome is similar or not.

2014-09-10 | GSE60534 | GEO

crr4_dyw1_col0-Comparative Arabidopsis Transcriptome -Sequencing

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CATseq a comparative Arabidopsis Transcriptome - RNA-Seq part

Project description:A comparative assessment between both technologies, RNASeq and microarrays to detect differential expression in Arabidopsis transcriptome. The sequencing approach use High-throughput sequencing on different Solexa technologies (GAII,HiSeq2000 multiplex or not) Wild type samples were analyzed from 2 tissus (flower buds and leaves) which have a very contrasted transcriptomic profile (i.e very high number of genes differentially expressed).

2014-06-01 | GSE53673 | GEO

CATseq a comparative Arabidopsis Transcriptome - RNA-Seq part

2014-06-01 | E-GEOD-53673 | biostudies-arrayexpress

Osmotic stress tolerance in Thellungiella halophila

Project description:Suitability of CATMA for the analysis of the transcriptome of Thellungiella halophila - flower/leaf transcriptomic comparison in Arabidopsis and Thellungiella. adt09-01_thellungiella - thelungiella

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Arabidopsis thaliana Wild-type vs. mutant (PcG)

Project description:Transcriptional profiling of Arabidopsis wild-type (Col0) control flower buds or seedlings with corresponding mutant flower buds or seedlings is performed using Aligent's Whole Arabidopsis Gene Expression Microarray (G2519F, V4, 4x44K).

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rfppr-Comparing nuclear gene expression in two CMS-systems using microarray technology

Project description:ra05-11_cmsrapeseed - rfppr - -To understand how/if fertility and the mitochondrial background are interlinked. -To understand how the mitochondrial background influences the nuclear gene expression. -Compare and describe the total nuclear gene expression of CMS vs. fertile and CMS vs. Restored. -Describe and analyse genes that differ in expression (of special interest are genes that differs in both comparisons). -Group genes e.g. floral genes, highly expressed genes, transcription factors, nuclear encoded genes targeted for the mitochondrion. -Comparing two CMS-systems to elucidate differences and similarities between them. - Flower buds from three B. napus lines (Pactol, CMS, Rfo PPR) at one developmental stage (stage 8). Keywords: wt vs mutant comparison 6 dye-swap - CATMA arrays

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Expression data from inflorescence (unopened flower buds) of Arabidopsis thaliana - comparison between Ler and ask1 mutant

Project description:ARABIDOPSIS SKP1-LIKE1 (ASK1) protein is involved in regulating flower development. We have compared ask1 mutant floral transcriptome with wild-type Ler to identify the role of ASK1-containing E3 ubiquitin ligases in regulating flower transcriptome. In this dataset, we include the expression data obtained from Arabidopsis thaliana Ler and ask1 mutant flower buds. We identified 42 genes and 74 genes that are down-regulated and up-regulated, respectively.

2013-02-01 | GSE42841 | GEO

Osmotic stress tolerance in Thellungiella halophila

2010-03-31 | E-GEOD-19740 | biostudies-arrayexpress

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