Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Crr4_dyw1_col0-Comparative Arabidopsis Transcriptome -Sequencing

ABSTRACT: cat-seq - crr4_dyw1_col0 - A comparative assessment of the Arabidopsis sequencing approach High-throughput sequencing cDNA GAII or HiSeq2000 sequenceur (technology Solexa) and data on CATMA array hybridation (version 6). These different characteristics will be studied through the analysis of control samples but also samples from mutants in genes coding for cytosolic or nuclear PPR proteins - CRR4 and DYW1 are two PPR mutants. They have the same post-transcriptonnel molecular defect and their phenotype is very close. We will try to determine here if their transcriptome is similar or not.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE60534 | GEO | 2014/09/10

SECONDARY ACCESSION(S): PRJNA260669

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

crr4_dyw1_col0-Comparative Arabidopsis Transcriptome -Sequencing

Project description:cat-seq - crr4_dyw1_col0 - A comparative assessment of the Arabidopsis sequencing approach High-throughput sequencing cDNA GAII or HiSeq2000 sequenceur (technology Solexa) and data on CATMA array hybridation (version 6). These different characteristics will be studied through the analysis of control samples but also samples from mutants in genes coding for cytosolic or nuclear PPR proteins - CRR4 and DYW1 are two PPR mutants. They have the same post-transcriptonnel molecular defect and their phenotype is very close. We will try to determine here if their transcriptome is similar or not. 4 dye-swap - genotype comparaison

2014-09-10 | E-GEOD-60534 | biostudies-arrayexpress

bf_vs_f-Comparative Arabidopsis Transcriptome -Sequencing

Project description:cat-seq - bf_vs_f - A comparative assessment of the Arabidopsis sequencing approach High-throughput sequencing cDNA GAII or HiSeq2000 sequenceur (technology Solexa) and data on CATMA array hybridation (version 6). These different characteristics will be studied through the analysis of control samples but also samples from mutants in genes coding for cytosolic or nuclear PPR proteins - The two selected samples are the flower buds and leaves of Arabidopsis. Two organs known as the transcriptome is very different. This experience will serve as reference

2013-09-10 | GSE45345 | GEO

bf_vs_f-Comparative Arabidopsis Transcriptome -Sequencing

2013-09-10 | E-GEOD-45345 | biostudies-arrayexpress

CATseq a comparative Arabidopsis Transcriptome - RNA-Seq part

Project description:A comparative assessment between both technologies, RNASeq and microarrays to detect differential expression in Arabidopsis transcriptome. The sequencing approach use High-throughput sequencing on different Solexa technologies (GAII,HiSeq2000 multiplex or not) Wild type samples were analyzed from 2 tissus (flower buds and leaves) which have a very contrasted transcriptomic profile (i.e very high number of genes differentially expressed).

2014-06-01 | GSE53673 | GEO

compare haiku mutants with wildtype-Study of small seed mutants.

Project description:au07-11_haiku - compare haiku mutants with wildtype - What are other genes involved in haiku pathway? - IKU1, IKU2 belong to same pathway which involved in seed development. Using array analysis try to find other components of this pathway. Keywords: gene knock out 10 dye-swap - CATMA arrays

2009-07-08 | E-GEOD-16956 | biostudies-arrayexpress

CATseq a comparative Arabidopsis Transcriptome - RNA-Seq part

2014-06-01 | E-GEOD-53673 | biostudies-arrayexpress

half_edit - A new predictive method for E+ PPR binding

Project description:ngs2018_04_half_edit-half_edit - Is there some transcriptomic defects in these different PPR KO mutants? - Identification of RNA editing defects in 3 differents KO mutants for E+ PPR. Results will be compared to different predictive methods in order to find out which one is the more accurate. Also looking for other transcriptomic defects in a pure-PPR.

2020-03-30 | GSE144674 | GEO

Interactions between H2O2 and glutathione in gene expression

Project description:rs08-03_glutathion - glutathion - How does glutathione content or reduction state affect H2O2-induced changes in the transcriptome? - Three single Arabidopsis mutants were used: cat2, knockout for catalase2 and so enriched in H2O2; cad2, defective in glutathione content; cytGR, knockout for cytosolic glutathione reductase. Cat2 was crossed with cad2 and cyt GR, and col0, 3 single mutants, and 2 double mutants were sampled in controlled growth conditions either in 8h or 16h photoperiod. Keywords: gene knock out 20 dye-swap pairs - CATMA arrays: 40 arrays

2010-07-22 | E-GEOD-21424 | biostudies-arrayexpress