Genomics

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Genome-wide identification of FHY3 binding sites in Arabidopsis floral organ (ChIP-Seq)


ABSTRACT: To identify FHY3 associated genes in floral organ. We performed ChIP-seq using 35S:3FLAG-FHY3-3HA fhy3-4 tansgenic plants. A total of 21, 24 and 37 million reads were obtained from two replicates and input library, respectively, which were uniquely mapped to the Arabidopsis genome by Bowtie2 software resulting in 1885 FHY3 binding peaks. 84% of FHY3 binding sites (1580 loci) were subsequently assigned to genic regions and grouped into 2192 genes in flower.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE69422 | GEO | 2016/07/28

SECONDARY ACCESSION(S): PRJNA289556

REPOSITORIES: GEO

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