Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sade-catma-A functional study of genes that might play a role in DNA repair/recombination and in the response ...

ABSTRACT: af51_atm - sade-catma - which Arabidopsis thaliana genes are induced by ionising radiations? Comparison of SADE transcriptome data (Af1999083) and micro-arrays transcriptome data. - gamma rays irradiated vs non irradiated 4 days old seedlings Keywords: treated vs untreated comparison

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE7981 | GEO | 2007/06/20

SECONDARY ACCESSION(S): PRJNA100749

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

atm time course-A functional study of genes that might play a role in DNA repair/recombination and in the resp...

Project description:af51_atm - atm time course - which Arabidopsis thaliana genes are induced by ionising radiations? Comparison of SADE transcriptome data (Af1999083) and micro-arrays transcriptome data. - which Arabidopsis thaliana genes are induced by ionising radiations ? time course: 0.75h, 1.5h, 3h, 5h dose: Gamma rays irradiated vs non irradiated 4-days old seedlings Keywords: time course

2007-06-20 | GSE7979 | GEO

atm-root-A functional study of genes that might play a role in DNA repair/recombination and in the response to...

Project description:af51_atm - atm-root - which Arabidopsis thaliana genes are induced by ionising radiations? Comparison of SADE transcriptome data (Af1999083) and micro-arrays transcriptome data. - Gamma rays irradiated vs non irradiated 3 or 4-days old seedlings Keywords: treated vs untreated comparison

2007-06-20 | GSE7980 | GEO

Transcription profiling of Arabidopsis seedlings of ATM mutant time course: 0.75h, 1.5h, 3h, 5h dose:gamma rays irradiated vs non irradiated 4 days old seedlings

Project description:which Arabidopsis thaliana genes are induced by ionising radiations? time course: 0.75h, 1.5h, 3h, 5h <br>dose:gamma rays irradiated vs non irradiated 4 days old seedlings

2005-05-15 | E-MEXP-235 | biostudies-arrayexpress

2 doses of ionising radiations (x-rays) -Transcriptomic analysis of effects of ionising radiation on Arabidopsis thaliana.

Project description:au09-03_gamma-irradiation - 2 doses of ionising radiations (x-rays) - Metabolic pathways involved in the response of plants to ionising radiation treatment. - Arabidopsis thaliana (Col-0) seeds were grown in Petri dishes under sterile conditions until they had 2-rosette-leaves (on average 10 days). Then they received a dose of 10 or 40 gray of X-ray (Faxitron HP). Plant were harvested 2 and 26 hours after irradiation, immediatly frozen and stored at -80°C until RNA extraction (Rneasy plant mini Kit, Qiagen) . Experiment was carried in duplicates and a non irradiated control was done for each time. 8 dye-swap - dose response,time course

2012-02-25 | E-GEOD-35942 | biostudies-arrayexpress

2 doses of ionising radiations (x-rays) -Transcriptomic analysis of effects of ionising radiation on Arabidopsis thaliana.

2012-02-25 | GSE35942 | GEO

Transcription profiling of irradiated Arabidopsis wild type samples

Project description:A functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies). Which Arabidopsis thaliana genes are induced by ionising radiations? Comparison of SADE transcriptome data (Af1999083) and micro-arrays transcriptome data.

2005-05-15 | E-MEXP-220 | biostudies-arrayexpress

Arabidopsis thaliana

Project description:2 doses of ionising radiations (x-rays) -Transcriptomic analysis of effects of ionising radiation on Arabidopsis thaliana.

| PRJNA151969 | ENA

Transcription profiling of Arabidopsis gamma irradiated vs non irradiated 3 or 4 days old seedlings

Project description:gamma rays irradiated vs non irradiated 3 or 4 days old seedlings

2005-03-15 | E-MEXP-234 | biostudies-arrayexpress

Effects of simulated space radiations on the tomato root proteome

Project description:Plant cultivation on spacecraft or planetary outposts is a promising and actual perspective both for food and bioactive molecules production. To this aim, plants response to ionizing radiations, as an important component of space radiation, must be assessed through on-ground experiments due to the potentially fatal effects on living systems. Hereby we investigated the effects of X-rays and -rays exposure on tomato ‘hairy root’ cultures (HRCs), which represent a solid platform for the production of pharmaceutically relevant molecules, including metabolites and recombinant proteins. In a space application perspective, we used a HRC system previously fortified through the accumulation of anthocyanins, which are known for their anti-oxidant properties. Roots were independently exposed to different photon radiations, namely X-rays (250 kV) and -rays (Co60, 1.25 MeV), both at the intensity of 0.5, 5 and 10 Gy. Molecular changes induced in the proteome of HRCs were investigated by a comparative approach based on Two-Dimensional Difference In-Gel electrophoresis (2D-DIGE) technology and mass spectrometry.

2019-09-25 | PXD014748 | Pride

Analysis of gene co-expression networks in skin cells exposed to different doses of ionising radiation at different time points

Project description:Most studies have analysed the effects of high dose radiation such as atomic bomb survivors in Japan, people exposed during the Chernobyl nuclear accident, patients undergoing radiation therapy, uranium miners, etc. However, it has been difficult to measure and assess the risk of cancer in people exposed to lower doses of ionising radiation, such as the people living at high altitudes, who are exposed to more natural background radiation from cosmic rays than people at sea level. We measured the genomic response to X-ray ionising radiation (10 cGy and 100 cGy) in a skin tissue model to compare the effects of low and high dose ionising radiation at different time points. The microarray data was then analysed using state-of-the art “upside-down pyramid” computational systems biology methods to identify genes contributing to the difference in the response to the different radiation doses. The model is reconstructed skin tissue, which is composed of keratinocytes that make up the epidermal layer, and fibroblasts that make up the dermal layer of the skin. Tissues were irradiated with 0, 10, and 100 cGy X-ray radiation. Skin plugs were harvested at 0, 3, 8, and 24 hours post irradiation.

2012-02-01 | E-GEOD-29344 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data