Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Germ-free versus conventional mouse terminal ileum

ABSTRACT: Transcriptomics (using DNA microarrays) was used to quantitatively compare the terminal ileum from conventional and germ-free mice (female and male; C57BL/10A and BALB/c strains).

ORGANISM(S): Mus musculus

PROVIDER: GSE95650 | GEO | 2017/09/29

SECONDARY ACCESSION(S): PRJNA377762

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcription profiling of mouse conventional and germ-free ileum, colon and rectum

Project description:Whole tissues corresponding to the ileum, colon and rectum were dissected from adult mice and used for RNA preparation. The aim of experiment was to study the impact of gut microbiota on gene expression in different gut regions. Experiment Overall Design: Three biological replicates were used for each condition. Each RNA preparation was independently hybridized to one chip.

2008-06-20 | E-GEOD-3304 | biostudies-arrayexpress

Germ-free mouse ileum iTRAQ shotgun LC-MSMS

Project description:Shotgun proteomics of normal versus germ-free mouse terminal ileum. 39 mice. Male and female. BALBc and C57BL10. The samples were labeled using iTRAQ 8plex and analyzed using a nano-LC-LTQ-Orbitrap-Velos-MSMS. This is the proteomics data from an n-omics project.

2017-10-04 | PXD003177 | Pride

Comparison of gene expression in conventional and germ-free intestine

2008-05-19 | GSE3304 | GEO

L cells transcriptional profiling from germ-free and conventional mice

Project description:L cells are one of enteroendocrine cells. To understand the role of gut microbiota in its regulation, germ-free and conventional reporter mouse strain was used to sort Lpos and Lneg populations using FACS. The cell population were sorted from both ileum and colon and were subjected to transcriptional profiling.

2018-02-21 | E-MTAB-6322 | biostudies-arrayexpress

Transcriptional response of terminal ileum to bacterial monocolonization

Project description:Here we analyzed the transcriptional profile of the terminal ileum of GF mice or mice monocolonized with three different bacterial species (C. histolyticum, B. adolescentis, or SFB) for 2 weeks.

2016-10-07 | GSE87676 | GEO

Normal mucosa of Proximal Colon (i.e. proximal to hepatic flexure) versus normal mucosa of Terminal ileum Transcriptomes (Affymetrix array U133A) in colon cancer patients

Project description:Proximal Colon (i.e. proximal to hepatic flexure) versus Terminal ileum Transcriptomes (Affymetrix array U133A). All subjects were operated on for proximal-colon tumor (biopsies of proximal-colon normal mucosa were made at more than 5 cm from the site of the tumor).

2021-03-03 | E-MTAB-10164 | biostudies-arrayexpress

Transcription profiling of sheep terminal ileum with 3 defined groups of MAP infection

Project description:Comparative expression profiles of 3 defined groups of Mycobacterium avium subspecies paratuberculosis (MAP) infected terminal ileum from sheep. Defined by histopathlogy and IS900 real-time PCR as multibacillary, paucibacillary and asymptomatic sheep. Six sheep per group provided biological and technical replicates on the RIGUA custom array (Watkins et al., 2008).

2009-05-15 | E-TABM-487 | biostudies-arrayexpress

Ileum and colon goblet cell proteome

Project description:This study is a comparative proteomics study of FACS sorted Muc2 expressing and non expressing cells in mouse ileum and colon.

2021-04-19 | PXD011527 | Pride

Temporal profile of germ-free and conventionally raised male mice (DUODENUM and ILEUM)

Project description:Temporal profile of germ-free and conventionally raised male mice (DUODENUM and ILEUM)

| PRJNA471298 | ENA

Comparison of conventional and germ-free gastrointestinal tract

Project description:Whole tissues corresponding to the corpus, jejunum, descending colon and rectum were dissected from each mouse, washed with ice-cold PBS, placed into 2ml of RNA-later and flash-frozen in liquid nitrogen. The corpus was defined as the part of the stomach different from the antrum (distinguished by a difference in colour). The jejunum was defined as the tissue between the first 4 cm and the last 2 cm of the small intestinal tube. The descending colon and the rectum were defined as the last 3 cm of the digestive tube, where the first 2 cm was the descending colon and the last centimetre was the rectum. Keywords: other

2004-06-24 | GSE1392 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data