Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - Cheese_Rind_Actinobacteria_LC-MSMS_BLANKA2

ABSTRACT: Liquid bacterial monocultures for 16 cheese rind microbiome derived Actinobacteria isolates were performed in Brain Heart Infusion (BHI) medium for 7 days and extracted using Amberlite XAD16 resin followed by methanol. Extracts were analyzed via LC-MS/MS and blank MS/MS spectra were removed using BLANKA2 with an eps value of 0.1 for GNPS classical molecular networking analysis.

INSTRUMENT(S): timsTOF fleX

ORGANISM(S): Brevibacterium (ncbitaxon:1696) Brachybacterium (ncbitaxon:43668) Glutamicibacter Arilaitensis (ncbitaxon:256701)

SUBMITTER: Laura M Sanchez

PROVIDER: MSV000091358 | GNPS | Fri Feb 24 14:49:00 GMT 2023

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Similar Datasets

Cheese_Rind_Actinobacteria_LC-MSMS_BLANKA2

Project description:Liquid bacterial monocultures for 16 cheese rind microbiome derived Actinobacteria isolates were performed in Brain Heart Infusion (BHI) medium for 7 days and extracted using Amberlite XAD16 resin followed by methanol. Extracts were analyzed via LC-MS/MS and blank MS/MS spectra were removed using BLANKA2 with an eps value of 0.1 for GNPS classical molecular networking analysis.

2023-02-24 | MSV000091358 | MassIVE

M-TraM Enterococcus faecium E1162 BHI and BHI with ampicillin

Project description:Mapping of transposon mutant library during growth in Brain Heart Infusion (BHI) broth and BHI broth with 20 ug/ml ampicillin

2012-10-09 | E-MEXP-3501 | biostudies-arrayexpress

Listeria monocytogenes EGD after growth BHI vs. LB vs. MM

Project description:Transcriptional profile of prfA, the dependent genes and the PTS genes after growth in BHI (brain-heart-infusion), LB (Luria Bertani broth) and MM (minimal medium (Premaratne et al. 2001) (each supplemented with 50 mM Glucose). Keywords: media comparison

2008-12-01 | GSE12143 | GEO

Caenorhabditis elegans infection with Candida albicans

Project description:N2 young adult animals were analyzed four hours after exposure to wild-type Candida albicans DAY185, heat-killed C. albicans DAY185 and heat-killed Escherichia coli OP50, all on Brain Heart Infusion (BHI) agar. It was necessary to use heat-killed E. coli OP50 as a control for these experiments because live E. coli OP50 (the normal nematode food source) is pathogenic to nematodes on BHI agar. These data identify the C. elegans genes that are differentially regulated during nematode infection with a human fungal pathogen.

2011-06-04 | GSE27401 | GEO

Transcription profiling of wild type and sigma B mutant Liseteria monocytogenes to characterise the EGD-e sigma B regulon

Project description:Briefly, over night cultures of L. monocytogenes EGD-e cells (wild-type and sigma B mutant) were grown in brain heart infusion (BHI) broth (Difco). Bacteria were diluted 1:50 in 20 ml fresh BHI and incubated using a 100 ml Erlenmeyer flask at 37 °C with shaking (180 rpm, Unitron [Infors]). Bacterial cells were harvested at OD600 1.0 (3 h), OD600 2.0 (4 h), OD600 2.5 (8 h) OD600 2.5 (16 h) using RNAprotect (Qiagen) according to manufacturer.

2008-07-02 | E-MEXP-1170 | biostudies-arrayexpress

Microarray-based transposon mapping analysis of Enterococcus faecium E1162 in a rat endocarditis model or control medium

Project description:Mapping of transposon mutant library during growth in Brain Heart Infusion (BHI) broth and in a rat endocarditis model. The goal of this study was to identify factors that play a role in E. faecium endocarditis by selection of transposon insertion mutants that lost the capacity to cause infections.

2016-03-24 | E-MTAB-4523 | biostudies-arrayexpress

Listeria monocytogenes EGD after growth BHI vs. LB vs. MM

2008-11-30 | E-GEOD-12143 | biostudies-arrayexpress

Microarray-based transposon mapping analysis of Enterococcus faecium E1162 that lost biofilm formation ability in a biofilm semi-static model

Project description:Mapping of transposon mutant library in Enterococcus faecium during growth in Brain Heart Infusion (BHI) broth and in a semi-static biofilm model. The goal of this study was to identify factors that play a role in E. faecium biofilm formation by selection of transposon insertion mutants that lost the capacity to form biofilm in vitro.

2016-05-01 | E-MTAB-4524 | biostudies-arrayexpress

RNA-seq of Pseudomonas aeruginosa PAO1 wild-type and ersA (sRNA) knock-out mutant

Project description:We investigate the differences in total gene expression between P.aeruginosa PAO1 (wild-type) and ΔersA isogenic mutant. ErsA is a small RNA involved in several P. aeruginosa phenotypes, including biofilm formation and antibiotic resistance. Cells were grown in a rich medium (BHI, Brain Heart Infusion) without any selective pressure (shaking at 37°C) and cells were harvested during stationary phase at OD600 2.7.

2018-02-05 | E-MTAB-6247 | biostudies-arrayexpress