Metabolomics

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3D DESI mass spectrometry imaging of 51 serial sections from a human liver metastasis

ABSTRACT: 51 serial sections from a single human liver metastasis are made available in this dataset. Four neighbouring sections were placed on a single slide and analysed together. The tissue sections were analysed by desorption electrospray ionisation mass spectrometry imaging (DESI-MSI) according to the procedure outlined in the associated GigaScience publication. The data files are made available in centroid- and profile-mode imzML format. Additionally, high- and low-resolution H&E-stained optical images are included.

INSTRUMENT(S): Exactive

SUBMITTER: James S McKenzie 

PROVIDER: MTBLS282 | MetaboLights | 2016-04-28

REPOSITORIES: MetaboLights

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Dataset's files

Source:
Action DRS
MTBLS282 Other
FILES Other
a_MTBLS282_ml-icl-liver3d_metabolite_profiling_mass_spectrometry.txt Txt
i_Investigation.txt Txt
metexplore_mapping.json Other
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Publications

<h4>Background</h4>Three-dimensional (3D) imaging mass spectrometry (MS) is an analytical chemistry technique for the 3D molecular analysis of a tissue specimen, entire organ, or microbial colonies on an agar plate. 3D-imaging MS has unique advantages over existing 3D imaging techniques, offers novel perspectives for understanding the spatial organization of biological processes, and has growing potential to be introduced into routine use in both biology and medicine. Owing to the sheer quantity  ...[more]

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