Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

CHATEAURENARD

ABSTRACT: Comparative microbiome analysis of Fusarium wilt suppressive and conducive soils from the Châteaurenard region

PROVIDER: PRJEB24081 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2230220.fastq.gz	Fastqsanger.gz
	ERR2230230.fastq.gz	Fastqsanger.gz
	ERR2230221.fastq.gz	Fastqsanger.gz
	ERR2230231.fastq.gz	Fastqsanger.gz
	ERR2230222.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Soil

Project description:Microbiome diversity in Fusarium wilt suppressive soils

| PRJNA727944 | ENA

Bacterial Wilt Disease Suppressive and Conducive Soils

Project description:Bacterial Wilt Disease Suppressive and Conducive Soils Targeted loci environmental

| PRJNA507753 | ENA

infected root time course

Project description:Time course of fusarium wilt infection of cotton root tissues Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes Keywords: other

2005-04-21 | GSE2544 | GEO

Infected hypocotyl time course

Project description:Time course of Fusarium wilt infection of cotton hypocotyl tissues Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes Keywords: other

2005-04-21 | GSE2543 | GEO

Infected hypocotyl time course

Project description:Time course of Fusarium wilt infection of cotton hypocotyl tissues Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes

2010-06-10 | E-GEOD-2543 | biostudies-arrayexpress

infected root time course

Project description:Time course of fusarium wilt infection of cotton root tissues Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes

2010-06-10 | E-GEOD-2544 | biostudies-arrayexpress

Project description:Microbiome in disease-suppressive and -conducive soils play a distinct role in response to Fusarium oxysporum invasion

| PRJNA404015 | ENA

Comparative O-glycoproteomics of Fusarium oxysporum

Project description:Fusarium oxysporum causes Fusarium wilt syndrome in more than 120 different plant hosts, including globally important crops such as tomato, cotton, banana, melon, etc. F. oxysporum shows high host specificity in over 150 formae speciales and have been ranked in the top 10 plant fungal pathogens. Although three PMTs encoded by the pmt1, pmt2, and pmt4 are annotated in the genome of F. oxysporum, their functions have not been reported. As O-mannosylation is not found in plants, a comprehensive understanding of PMTs in F. oxysporum becomes attractive for the development of new strategy against Fusarium wilt. In order to understand the molecular mechanism of the differential functions of three PMTs, a comparative O-glycoproteome analysis of the pmt mutants were carried out.

2019-10-28 | PXD012530 | Pride

Discovery and Differential Expression of miRNAs in Fusarium Wilt Resistant and Susceptible Banana Varieties

Project description:MicroRNAs (miRNAs) are a class of endogenous non-coding small RNAs that regulate targeted mRNAs by degrading or repressing translation, considered as post-transcrption regulators. So far, a large number of miRNAs have been discovered in model plants, but little information is available on miRNAs in banana. In this study, by sequencing the small RNA (sRNA) transcriptomes of Fusarium wilt resistant and susceptible banana varieties, 139 members in 38 miRNA families were discovered, and six out of eight new miRNAs were confirmed by RT-PCR. According to the analysis of sRNA transcriptome data and qRT-PCR verification, some miRNAs were differentially expressed between Fusarium wilt resistant and susceptible banana varieties. Two hundred and ninety-nine and 31 target genes were predicted based on the draft maps of banana B genome and Fusarium oxysporum (FOC1, FOC4) genomes respectively. Specifically, two important pathogenic genes in Fusarium oxysporum genomes, feruloyl esterase gene and proline iminopeptidase gene, were targeted by banana miRNAs. These novel findings may provide a new strategy for the prevention and control of Fusarium wilt in banana.

2016-10-14 | GSE74005 | GEO

Project description:Metagenomics of suppressive and conducive soils against Fusarium oxysporum f.sp. cubense in banana plantation

| PRJNA670586 | ENA