Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Promoter Capture-C of iPSC-derived NPCs and neurons

ABSTRACT: Promoter Capture-C of iPSC-derived NPCs and neurons

PROVIDER: PRJEB38644 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Promoter Capture-C of iPSC-derived NPCs and neurons

Project description:To connect the neuronal developmental disorders associated GWAS signal to their target effector genes, we performed an integrated analysis of transcriptomics, epigenomics and chromatin conformation changes in an in vitro cellular model. Induced human pluripotent stem cell–derived neural progenitor cells (NPCs) were differentiated into neurons and then subjected to a combination of high-resolution promoter-focused Capture C, ATAC-seq and RNA-seq.

2021-05-27 | E-MTAB-9159 | biostudies-arrayexpress

ATAC-seq of iPSC-derived NPCs and neurons

Project description:ATAC-seq of iPSC-derived NPCs and neurons

| PRJEB38376 | ENA

ATAC-seq of iPSC-derived NPCs and neurons

2021-05-27 | E-MTAB-9087 | biostudies-arrayexpress

RNA-seq of iPSC-derived NPCs and neurons from CHOPWT10 and CHOPWT14 cell lines

2021-05-27 | E-MTAB-9085 | biostudies-arrayexpress

RNA-seq of iPSC-derived NPCs and neurons from CHOPWT10 and CHOPWT14 cell lines

Project description:RNA-seq of iPSC-derived NPCs and neurons from CHOPWT10 and CHOPWT14 cell lines

| PRJEB38374 | ENA

Gene expression from human iPSC derived motor neurons.

Project description:Gene expression from human iPSC derived motor neurons.

| EGAS00001003785 | EGA

Gene expression from human iPSC derived cortical neurons

Project description:Gene expression from icas9 human iPSC derived cortical neurons treated with and without doxycycline

| EGAS00001004782 | EGA

Promoter capture Hi-C of human SGBS (Simpson-Golabi-Behmel syndrome preadipocyte) cells and iPSC-derived hypothalamic cells

Project description:To identify distal chromatin contacts between promoters and their putative regulatory elements in SGBS preadipocytes and hypothalamic arcuate-like neurons derived from iPSC, we performed Hi-C with a capture step to enrich the library for contacts involving promoters. Hi-C with a capture step was performed according to PMID: 29988018

2021-03-20 | E-MTAB-10200 | biostudies-arrayexpress

RNA-Seq in PWS iPSC-derived neurons

Project description:Transcriptional analysis of PWS iPSC-derived neurons compared to unaffected controls

2016-12-12 | GSE89991 | GEO

Ribo-seq of iPSC-derived neurons with TDP-43 knockdown

Project description:TDP-43 is a key splicing regulator. Here, we perform ribosome profiling on iPSC-derived neurons to examine how translation is affected by TDP-43 knockdown.

2022-02-28 | E-MTAB-10235 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data