Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Petroleum phytoremediation

ABSTRACT: Deep 16s rRNA pyrosequencing reveals a bacterial community associated with petroleum hydrocarbon fractions degradation by PGPR enhanced phytoremediation

PROVIDER: PRJEB8995 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Neosartorya fischeri Comparative Transcriptome when the fungi uses a differente carbon source, petroleum asphaltenes or glucose-peptona

Project description:Neosartorya fischeri is a fungi that is able to grow in petroleum asphaltenes as sole carbon source. Here, was investigated which enzymes were up regulated

2015-04-23 | GSE68146 | GEO

Endophytic and rhizophytic prokaryotic communities in S. alterniflora and petroleum degradation

Project description:The experiment was designed to test the interactions of Spartina alterniflora, its microbiome, and the interaction of the plant-microbe relationship with oil from the Deepwater Horizon oil spill (DWH). Total RNA was extracted from leaf and root microbiome of S. alterniflora in soils that were oiled in DWH oil spill with or without added oil, as well as those grown in unoiled soil with or without added oil. The work in its entirety characterizes the transport, fate and catabolic activities of bacterial communities in petroleum-polluted soils and within plant tissues.

2020-04-10 | GSE148431 | GEO

Petroleum contaminated soils

Project description:Petroleum contaminated soils Metagenomic assembly

| PRJNA721029 | ENA

Petroleum-Contaminated Soil

Project description:Petroleum-Contaminated Soil Metagenomic assembly

| PRJNA722157 | ENA

Petroleum contaminated soil

Project description:Petroleum contaminated soil Raw sequence reads

| PRJNA796129 | ENA

Degradation of C30 - Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities

Project description:A significant part of the heavier petroleum fraction resulting from offshore oil-spills sinks to the deep-sea. Its fate and biodegradation by microbial communities is unclear. In particular, the physiological and metabolic features of hydrostatic pressure (HP) adapted oil-degraders have been neglected. In this study, hydrocarbon-free sediment from 1km below surface water (bsl) was incubated at 0.1, 10 and 20MPa (equivalent to surface waters, 1 and 2km bsl) using triacontane (C30) as sole carbon source for a 3-month enrichment period. HP strongly impacted biodegration, as it selected for microbial communities with small cells, high O2 respiration and nutrients requirements, but low biomass and C30-degradation yields. The alkane-degrading metaproteome linked to β-oxidation was detected but its expression was reduced under HP contrary to several housekeeping genes. This was reflected in the enriched communities, as atmospheric pressure was dominated by hydrocarbonoclastic bacteria while non-specialized or previously unrecognized oil-degrading genera were enriched under HP.

2018-12-19 | PXD004328 | Pride

Deep sea microbial community: potential to remediate petroleum hydrocarbons

Project description:Deep sea microbial community: potential to remediate petroleum hydrocarbons

| PRJEB39245 | ENA

Hepatic Gene Expression in Rainbow Trout (Oncorhynchus mykiss) Exposed to Different Hydrocarbon Mixtures

Project description:Traditional biomarkers for hydrocarbon exposure are not induced by all petroleum substances. The objective of this study was to determine if exposure to a crude oil and different refined oils would generate a common hydrocarbon-specific response in gene expression profiles that could be used as generic biomarkers of hydrocarbon exposure. Juvenile rainbow trout (Oncorhynchus mykiss) were exposed to the water accommodated fraction (WAF) of either kerosene, gas oil, heavy fuel oil, or crude oil for 96 hours. Tissue was collected for RNA extraction and microarray analysis. Exposure to each WAF resulted in a different list of differentially regulated genes, with few genes in common across treatments. Exposure to crude oil WAF changed the expression of genes including CYP1A and GST with known roles in detoxification pathways. These gene expression profiles were compared to others from previous experiments which used a diverse suite of toxicants. Clustering algorithms successfully i dentified gene expression profiles resulting from hydrocarbon exposure. These preliminary analyses highlight the difficulties of using single genes as diagnostic of petroleum hydrocarbon exposures. Further work is needed to determine if multivariate transcriptomic-based biomarkers may be a more effective tool than single gene studies for exposure monitoring of different oils.

2009-12-15 | GSE19483 | GEO

Hepatic Gene Expression in Rainbow Trout (Oncorhynchus mykiss) Exposed to Different Hydrocarbon Mixtures

2010-05-18 | E-GEOD-19483 | biostudies-arrayexpress

Petroleum Wastewater

Project description:Microbial consortium from Petroleum Wastewater was named CKE-DUT08, Raw sequence reads

| PRJNA428550 | ENA