Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Early-life environmental enrichment generates persistent individualized behavior in mice

ABSTRACT: Early-life environmental enrichment generates persistent individualized behavior in mice

PROVIDER: PRJNA578151 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Early-life environmental enrichment generates persistent individualized behavior in mice

Project description:Analysis of hippocampal DNA methylation changes that were induced by environmental enrichment and maintained for long-term after withdrawal from the enriched environment.

2020-08-26 | GSE139051 | GEO

Early-life environmental enrichment generates persistent individualized behavior in mice.

Project description: Not available

| S-EPMC7449688 | biostudies-literature

Repeated cortico-striatal stimulation generates persistent OCD-like behavior.

Project description: Not available

| S-EPMC3954809 | biostudies-literature

RNA-seq alignment to individualized genomes

2014-06-10 | GSE45684 | GEO

RNA-seq alignment to individualized genomes

Project description:The source of most errors in RNA sequencing (RNA-seq) read alignment is in the repetitive structure of the genome and not with the alignment algorithm. Genetic variation away from the reference sequence exacerbates this problem causing reads to be assigned to the wrong location. We developed a method, implemented as the software package Seqnature, to construct the imputed genomes of individuals (individualized genomes) of experimental model organisms including inbred mouse strains and genetically unique outbred animals. Alignment to individualized genomes increases read mapping accuracy and improves transcript abundance estimates. In an application to expression QTL mapping, this approach corrected erroneous linkages and unmasked thousands of hidden associations. Individualized genomes accounting for genetic variation will be useful for human short-read sequencing and other sequencing applications including ChIP-seq. Illumina 100bp single-end liver RNA-seq from 277 male and female Diversity Outbred 26-week old mice raised on standard chow or high fat diet. In addition, Illumina 100bp single-end liver RNA-seq from 128 male 26-week old male mice (20 weeks for NZO strain) from each of the DO founder strains raised on standard chow or high fat diet (8 males per strain by diet group). Each sample was sequenced in 2-4x technical replicates across multiple flowcells. Samples were randomly assigned lanes and multiplexed at 12-24x.

2014-06-10 | E-GEOD-45684 | biostudies-arrayexpress

ncRNA expression-based, individualized outcome prediction for CRC patients

Project description:Individualized outcome prediction classifiers were successfully constructed through expression profiling of ncRNAs in 165 CRC cases.

2016-12-28 | GSE92928 | GEO

Gene expression-based, individualized outcome prediction for autism

Project description:Individualized outcome prediction classifiers were successfully constructed through expression profiling of 91 up-regulated and 67 down-regulated miRNAs in 5 autism spectrum disorder (ASD) cases and 5 controls.

2015-04-17 | GSE67979 | GEO

Gene expression-based, individualized outcome prediction for RUNX1T1 Knock-down treated ECFCs

Project description:Individualized outcome prediction classifiers were successfully constructed through expression profiling of RUNX1T1 mediated.

2017-08-17 | GSE86594 | GEO

Gene silenced-based, individualized cancer progression outcome prediction for shATMIN stable transfectants

Project description:Individualized outcome prediction classifiers were successfully constructed through expression profiling in stable transfectants

2019-05-25 | GSE81866 | GEO

Gene expression-based, individualized cancer progression outcome prediction for S61 stable transfectants

Project description:Individualized outcome prediction classifiers were successfully constructed through expression profiling in stable transfectants

2016-04-26 | GSE80641 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data