Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RiboMeth-seq data from Pyrococcus furiosus

ABSTRACT: RiboMeth-seq data from Pyrococcus furiosus

PROVIDER: PRJNA642860 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12109248.fastq.gz	Fastqsanger.gz
	SRR12109249.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

RiboMeth-seq data from Pyrococcus furiosus

Project description:Semiconductor sequencing of alkaline degraded total RNA from Pyrococcus furiosus annotated for ”The 23S ribosomal RNA from Pyrococcus furiosus is circularly permuted” published in Frontiers in Microbiology”

2020-11-24 | GSE153501 | GEO

Pyrococcus furiosus psiRNAs

Project description:Small RNA Sequencing from Pyrococcus furiosus Keywords: Small RNA Analysis

2009-12-28 | GSE16968 | GEO

Pyrococcus furiosus psiRNAs

Project description:Small RNA Sequencing from Pyrococcus furiosus Keywords: Small RNA Analysis Analysis of Small RNA from one sample of Pyrococcus furiosus

2009-12-28 | E-GEOD-16968 | biostudies-arrayexpress

Pyrococcus furiosus

Project description:Pyrococcus furiosus psiRNAs

| PRJNA117257 | ENA

Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus

Project description:The transcriptional regulator TrmBL1 from the hyperthermophilic euryarchaeon Pyrococcus furiosus functions as repressor as well as activator of genes encoding enzymes mainly involved in sugar uptake, glykolysis and gluconeogenesis. The aim of this study was to explore the genome-wide binding sites of TrmBL1 in Pyrococus furiosus by ChIP-seq in vivo. Two different growth conditions were tested. Pyrococcus furiosus was cultured on pyruvate to induce gluconeogenic growth and on starch to induce glycolytic growth.

2016-01-13 | E-MTAB-3959 | biostudies-arrayexpress

Pyrococcus furiosus crRNAs associated with the Cas RAMP module complex

Project description:Analysis of CRISPR RNAs from both total Pyrococcus furiosus RNA and those that co-purify with the Cmr complex, which has been predicted to be involved in RNA-mediated targeting of foreign RNAs in prokaryotes. Small RNAs (20 - 70 nts) were isolated either from total Pyrococcus furiosus RNA or RNAs isolated from immunopurified Cmr complexes. The RNAs were cloned and sequenced using the Illumina platform. Results provide insight into the anatomy of Cmr2-associated CRISPR RNAs.

2012-01-31 | GSE33256 | GEO

Pyrococcus furiosus DSM 3638 growth curve, tiling arrays

Project description:Experimentally mapped transcriptome structure of Pyrococcus furiosus DSM 3638 by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 16 nt).

2011-06-27 | GSE26778 | GEO

Heat and Cold Shock Response in Pyrococcus furiosus

Project description:We designed an experimental setup to investigate the transcriptomic and proteomic responses of the hyperthermophilic archaeon Pyrococcus furiosus to heat and cold shock. P. furiosus is a model organism for studying microbial adaptation to extreme environments, including deep-sea hydrothermal vents with temperature gradients ranging from 1°C to 400°C. We aimed to simulate critical conditions where P. furiosus cannot grow and to examine the immediate response to thermal stress as well as the recovery process.

2023-10-11 | PXD041262 | Pride

Pyrococcus furiosus COM1

Project description:Pyrococcus furiosus COM1 Genome Sequencing

| PRJNA163827 | ENA

Pyrococcus furiosus crRNAs associated with the Cas RAMP module complex

2012-01-31 | E-GEOD-33256 | biostudies-arrayexpress