Proteomics

Dataset Information

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Substrate Trapping Proteomics Reveals Targets of the βTrCP2/FBXW11 Ubiquitin Ligase


ABSTRACT: We inhibited the proteosome to ‘trap’ ubiquitylated substrates on the SCFFBXW11 E3 complex. Comparative mass spectrometry analysis of immunopurified FBXW11 protein complexes before and after proteosome inhibition revealed known and putatively novel substrates.

INSTRUMENT(S): LTQ Orbitrap Velos, LTQ Orbitrap Elite

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Permanent Cell Line Cell, Cell Culture

SUBMITTER: Dennis Goldfarb  

LAB HEAD: Michael Ben Major

PROVIDER: PXD001062 | Pride | 2014-10-24

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
042207-HOS-DMSO.RAW Raw
042207-HOS-DMSO.pep.xml Pepxml
042207-HOS-DMSO.prot.xml Xml
042307-HOS-MG132.RAW Raw
042307-HOS-MG132.pep.xml Pepxml
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Publications

Substrate trapping proteomics reveals targets of the βTrCP2/FBXW11 ubiquitin ligase.

Kim Tai Young TY   Siesser Priscila F PF   Rossman Kent L KL   Goldfarb Dennis D   Mackinnon Kathryn K   Yan Feng F   Yi XianHua X   MacCoss Michael J MJ   Moon Randall T RT   Der Channing J CJ   Major Michael B MB  

Molecular and cellular biology 20141020 1


Defining the full complement of substrates for each ubiquitin ligase remains an important challenge. Improvements in mass spectrometry instrumentation and computation and in protein biochemistry methods have resulted in several new methods for ubiquitin ligase substrate identification. Here we used the parallel adapter capture (PAC) proteomics approach to study βTrCP2/FBXW11, a substrate adaptor for the SKP1-CUL1-F-box (SCF) E3 ubiquitin ligase complex. The processivity of the ubiquitylation rea  ...[more]

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