Proteomics

Dataset Information

0

PeptideShaker - A complex standard for protein identification, designed by evolution


ABSTRACT: Mass spectrometry-based proteomics data, obtained experimentally or via public repositories, remains challenging to analyze. This challenge is particularly felt when re-analysing or re-purposing public data sets, endeavours that otherwise hold great potential. PeptideShaker is an open source system that greatly simplifies the interpretation and dissemination of proteomics data, and that automates the re-analysis of public data, thus completing the proteomics data cycle (http://peptide-shaker.googlecode.com).

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Pyrococcus Furiosus

TISSUE(S): Whole Body

SUBMITTER: Marc Vaudel  

LAB HEAD: Lennart Martens

PROVIDER: PXD001077 | Pride | 2014-06-24

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
Velos005137.mgf Mgf
Velos005137.pride.mgf.gz Mgf
Velos005137.raw Raw
supp_info.mzid.gz Mzid
supp_info.pride.mztab.gz Mztab
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Publications

A complex standard for protein identification, designed by evolution.

Vaudel Marc M   Burkhart Julia M JM   Breiter Daniela D   Zahedi René P RP   Sickmann Albert A   Martens Lennart L  

Journal of proteome research 20120913 10


Shotgun proteomic investigations rely on the algorithmic assignment of mass spectra to peptides. The quality of these matches is therefore a cornerstone in the analysis and has been the subject of numerous recent developments. In order to establish the benefits of novel algorithms, they are applied to reference samples of known content. However, these were recently shown to be either too simple to resemble typical real-life samples or as leading to results of lower accuracy as the method itself.  ...[more]

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