Proteomics

Dataset Information

0

Yeast inter-species comparative proteomics

ABSTRACT: Different yeast species in distinct clades within Saccharomycetaceae family are interesting model organisms for inter-species comparative proteomics, in regard to different metabolic properties and genomic architectures. The aim in this analysis is revealing conserved and diverse expression profile of proteome under different culture conditions, including fermentative and non-fermentative growth. Our label-free quantitative proteomics analysis not only uncovered species-specific characters of metabolic proteins expression pattern and also provide intriguing insight into optimized protein cost allocation and evolutionary role for duplicated genes.

INSTRUMENT(S): LTQ Orbitrap

ORGANISM(S): Saccharomyces Cerevisiae (baker's Yeast)

TISSUE(S): Cell Culture

SUBMITTER: Keiji Kito  

LAB HEAD: Keiji Kito

PROVIDER: PXD001865 | Pride | 2015-11-16

REPOSITORIES: Pride

Json Xml

Dataset's files

Source:
Action DRS
Scer_glucose_exp1_ORF_PSM_list.xlsx Xlsx
Scer_glucose_exp1_fr10_RAW.zip Other
Scer_glucose_exp1_fr10_msf.zip Other
Scer_glucose_exp1_fr11_RAW.zip Other
Scer_glucose_exp1_fr11_msf.zip Other
Items per page:
1 - 5 of 307
altmetric image

Publications

Yeast Interspecies Comparative Proteomics Reveals Divergence in Expression Profiles and Provides Insights into Proteome Resource Allocation and Evolutionary Roles of Gene Duplication.

Kito Keiji K   Ito Haruka H   Nohara Takehiro T   Ohnishi Mihoko M   Ishibashi Yuko Y   Takeda Daisuke D  

Molecular & cellular proteomics : MCP 20151111 1

Omics analysis is a versatile approach for understanding the conservation and diversity of molecular systems across multiple taxa. In this study, we compared the proteome expression profiles of four yeast species (Saccharomyces cerevisiae, Saccharomyces mikatae, Kluyveromyces waltii, and Kluyveromyces lactis) grown on glucose- or glycerol-containing media. Conserved expression changes across all species were observed only for a small proportion of all proteins differentially expressed between th  ...[more]

Similar Datasets

Proteomics Yeast inter-species comparative proteomics
2015-11-17 | PXD001867 | Pride
Proteomics Yeast inter-species comparative proteomics
2015-11-16 | PXD001866 | Pride
Proteomics Yeast inter-species comparative proteomics
2015-11-17 | PXD001868 | Pride
Transcriptomics Fermentative and nitrate respiratory transcriptome analysis of E. coli K12 MG1655
2014-02-27 | E-GEOD-55365 | biostudies-arrayexpress
Transcriptomics Exploration of the genetic makeup and expression of the glycolytic and fermentative pathways within the Saccharomyces genus
2018-07-21 | GSE117404 | GEO
Transcriptomics Transcriptome sequencing of divergent Fabales
2023-07-01 | E-MTAB-11756 | biostudies-arrayexpress
Transcriptomics TiO2 nanoparticles' library toxicity (UV and non-UV exposure) – High-throughput in vivo transcriptomics reveals mechanisms
2023-03-02 | GSE81694 | GEO
Genomics Fingerprinting the Asterid species using subtracted diversity array reveals novel species-specific sequences.
2014-07-31 | GSE31242 | GEO
Metabolomics GNPS - 71 Rhamnaceae plant extracts
2017-12-12 | MSV000081805 | GNPS
Proteomics Selection of reference peptides for absolute quantification of budding yeast proteome
2016-10-06 | PXD003085 | Pride