Project description:High CO2 treatment achieved significant acceleration of deastringency of ‘Jingmianshi’ persimmon fruit and subsequent softening, which could be retarded by adding 1-MCP. Comparison of the differentially expressed genes in the different treatments narrowed down the potential candidate genes for persimmon post-deastringency or softening.
2020-05-13 | GSE137588 | GEO
Project description:Transcriptome Sequencing of Different Ploidy Wheat
| PRJNA553311 | ENA
Project description:Transcriptome data of different ploidy kiwifruit
Project description:Groups of cells belonging to different ploidy populations (based on PI staining) were collected from an undifferentiated soft tissue sarcoma. The different ploidy populations underwent RRBS, after which copy number signatures for the ploidy-sorted populations and the bulk population were extracted.
Project description:Groups of cells belonging to different ploidy populations (based on PI staining) were collected from an undifferentiated soft tissue sarcoma. The different ploidy populations underwent RRBS, after which copy number signatures for the ploidy-sorted populations and the bulk population were extracted.
| EGAD00001008667 | EGA
Project description:Transcriptome sequencing of different ploidy broomcorn millet
Project description:Cell size is tightly controlled in healthy tissues and single-celled organisms, but it remains unclear how cell size influences physiology. Increasing cell size was recently shown to remodel the proteomes of cultured human cells, demonstrating that large and small cells of the same type can be compositionally different. Here, we utilize the natural heterogeneity of hepatocyte ploidy and yeast genetics to establish that ploidy-to-cell size ratio is a highly conserved determinant of proteome composition. In both mammalian and yeast cells, genome dilution by cell growth elicits a starvation-like phenotype, suggesting that growth in large cells is restricted by genome concentration in manner that mimics a limiting nutrient. Moreover, genome dilution explains some proteomic changes ascribed to yeast aging. Overall, our data indicate that genome concentration drives changes in cell composition independently of external environmental cues.
Project description:Different yeast species in distinct clades within Saccharomycetaceae family are interesting model organisms for inter-species comparative proteomics, in regard to different metabolic properties and genomic architectures. The aim in this analysis is revealing conserved and diverse expression profile of proteome under different culture conditions, including fermentative and non-fermentative growth. Our label-free quantitative proteomics analysis not only uncovered species-specific characters of metabolic proteins expression pattern and also provide intriguing insight into optimized protein cost allocation and evolutionary role for duplicated genes.
Project description:Different yeast species in distinct clades within Saccharomycetaceae family are interesting model organisms for inter-species comparative proteomics, in regard to different metabolic properties and genomic architectures. The aim in this analysis is revealing conserved and diverse expression profile of proteome under different culture conditions, including fermentative and non-fermentative growth. Our label-free quantitative proteomics analysis not only uncovered species-specific characters of metabolic proteins expression pattern and also provide intriguing insight into optimized protein cost allocation and evolutionary role for duplicated genes.