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Proteogenomics of Gammarus fossarum ovaries

ABSTRACT: This project contributes to the description of the core-proteome of female reproductive tissues from crustacean amphipods.

INSTRUMENT(S): LTQ Orbitrap

ORGANISM(S): Gammarus Fossarum

TISSUE(S): Ovary

SUBMITTER: Jean ARMENGAUD

LAB HEAD: Jean Armengaud

PROVIDER: PXD002253 | Pride | 2015-09-21

REPOSITORIES: Pride

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Dataset's files

Source:

			Action	DRS
	F102282.mzid.gz	Mzid
	F102282.pride.mztab.gz	Mztab
	GAMMARUS_contigs.prot_20120709.fasta	Fasta
	Ovo_D1-n1-d20.RAW	Raw
	Ovo_D1-n2-d20.RAW	Raw

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Publications

Data for comparative proteomics of ovaries from five non-model, crustacean amphipods.

Trapp Judith J Almunia Christine C Gaillard Jean-Charles JC Pible Olivier O Chaumot Arnaud A Geffard Olivier O Armengaud Jean J

Data in brief 20150812

Ovaries were taken from five sexually mature amphipods: Gammarus fossarum, Gammarus pulex, Gammarus roeseli, Hyallela azteca and Parhyale hawaiensis. The soluble proteome extracted from individual pair of ovaries from five biological replicates was trypsin digested and the resulting peptides were analyzed by high resolution tandem mass spectrometry. The spectra were assigned with four protein sequence databases with different specificities: a RNAseq-derived G. fossarum database; a RNAseq-derived ...[more]

PMID: 26380837

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Egg yolk proteins G. fossarum - High-throughput proteome dynamics for discovery of key proteins in sentinel species: Unsuspected vitellogenins diversity in the crustacean Gammarus fossarum

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