Proteomics

Dataset Information

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Flax cell wall proteome - A cell wall proteome and targeted cell wall analyses provide novel information on hemicellulose metabolism in flax

ABSTRACT: Proteomic analyses of four different flax organs/tissues (inner-stem, outer-stem, leaves and roots) enriched in proteins from 3 different sub-compartments (soluble-, membrane-, and cell wall-proteins) was combined with publically available data on flax seed and whole-stem proteins to generate a flax protein database containing 2996 non-redundant total proteins. Examination of the proteins present in different flax organs/tissues provided a detailed overview of cell wall metabolism and highlighted the importance of hemicellulose and pectin remodeling in stem tissues.

INSTRUMENT(S): TripleTOF 5600

ORGANISM(S): Linum Usitatissimum

TISSUE(S): Plant Cell, Root, Leaf, Stem

SUBMITTER: Céline LECLERCQ  

LAB HEAD: Dr Jenny Renaut

PROVIDER: PXD005003 | Pride | 2017-07-19

REPOSITORIES: Pride

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Dataset's files

Source:
Action DRS
F097008.dat Other
F097008.dat-pride-filtered.pride.mgf.gz Mgf
F097008.dat-pride-filtered.pride.mztab.gz Mztab
F097008.dat-pride-filtered.xml.gz Xml
F097009.dat Other
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Publications

A Cell Wall Proteome and Targeted Cell Wall Analyses Provide Novel Information on Hemicellulose Metabolism in Flax.

Chabi Malika M   Goulas Estelle E   Leclercq Celine C CC   de Waele Isabelle I   Rihouey Christophe C   Cenci Ugo U   Day Arnaud A   Blervacq Anne-Sophie AS   Neutelings Godfrey G   Duponchel Ludovic L   Lerouge Patrice P   Hausman Jean-François JF   Renaut Jenny J   Hawkins Simon S  

Molecular & cellular proteomics : MCP 20170713 9

Experimentally-generated (nanoLC-MS/MS) proteomic analyses of four different flax organs/tissues (inner-stem, outer-stem, leaves and roots) enriched in proteins from 3 different sub-compartments (soluble-, membrane-, and cell wall-proteins) was combined with publically available data on flax seed and whole-stem proteins to generate a flax protein database containing 2996 nonredundant total proteins. Subsequent multiple analyses (MapMan, CAZy, WallProtDB and expert curation) of this database were  ...[more]

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